Panicum virgatum (switchgrass): 120657338
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Entry
120657338 CDS
T07260
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
120657338
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120657338
Ion channels [BR:
pvir04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120657338
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Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
DUF6525
Motif
Other DBs
NCBI-GeneID:
120657338
NCBI-ProteinID:
XP_039791571
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Position
1N:63166993..63174933
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AA seq
762 aa
AA seq
DB search
MTDQERDDVPMLLRNVELPRFPLRSTSMCMPVRDDEYEEDTFVPHTGPLFIQPPTQMTSG
IPFTSRDTPDRLPRPSQGKPVSKPHAIMPEETGGNRWSYSGQVPKNEHLLMSGPLGQCDN
PDCVNCPPACKNKRHFHRGSNALDNKLHNTISGHVGGWKKKIEKILSNIPIMNPHAKVVQ
QWNQFFVISCLIAIFIDPLFFFLLSVEQDNKCIVLNWNFATALAVVRSVTDAIYFLHMLL
QFRLAYVAPESRVVGAGDLVDEPKKVAVHYLHGYFLLDFFVVLPLPQVMILLVIPKYVGL
SGANYAKNLLRATVLLQYVPRIIRFVPLLDGQSANGFIFESAWANFVINLLMFVLAGHVV
GSCWYLFGLQRVNQCLRDACSASSIPYCDTFINCGGSGLYRQQWSNDSGAAACFNTGNDA
TFQYGIYGQAVLLTTEDSAVKRYIYSLFWGFQQISTLAGNLVPSYFAWEVLFTMAIIGLG
LLLFALLIGNMQNFLQALGRRRLEMQLRRRDVEKWMSHRRLPEDLRRRVRRAERFTWAAT
QGVNEEELLSNLPEDIQRDIRRHFFRFLNKVRLFTLMDWPILDAICDKLRQNLYISGSDI
LYQGGTVDKMVFIVRGKLESVSADGSKAQLHDGDVCGEELLTWYLEHSSVNRDSAKIKFH
GMRLVAIRTVRCSTNVEAFVLRASDLEEVTSQFARFLRNPRVQGAIRYESPYWRTIAATR
IQVAWRYRKRRLKRAEQSRLNEESYPPYSITAHDSFRPGQWG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaggagagagatgatgttcctatgttgctacgaaatgttgagcttccaaga
tttcctctaagaagtacttcaatgtgtatgccagtaagggatgatgaatatgaagaagac
acctttgtaccccatactggcccactattcattcagccgccaactcagatgacatcgggc
attccgtttacaagtagagacacgccagataggctgcctagaccttcacagggaaaacca
gtcagcaagccacatgctatcatgccagaagaaactggaggaaataggtggtcttacagt
ggacaagttccaaagaacgaacacttactgatgtctggacctttggggcaatgcgataat
cctgattgtgtcaattgccctcctgcttgtaaaaacaaaagacatttccacagaggctca
aatgctttagacaataagcttcataatactatttctggtcatgttggtggatggaagaaa
aagatcgagaagattctgtcaaacattccaattatgaacccacatgcaaaggttgttcag
cagtggaatcaattctttgtgatatcatgcctgattgccattttcattgatccactattc
ttcttcctattatcagtagagcaggataataaatgcatagttttaaactggaattttgct
acggcacttgcggttgtaagaagtgtgactgatgctatttatttcttgcacatgctgctt
cagttcagattggcttatgttgcccccgagtcacgagtggtgggagctggagatttggtt
gatgagccaaagaaagttgctgtccattatcttcatggttactttttacttgattttttc
gttgtgcttccactccctcaggtgatgatactgctagttatcccaaaatatgttgggtta
tcaggtgcaaactatgctaagaatttattgcgtgccactgttcttcttcaatacgtgcct
cgtatcatcagatttgtaccactacttgatggtcagtctgccaatggattcatattcgag
tcagcatgggccaattttgtgatcaaccttctaatgtttgttttggcgggacatgttgtt
ggttcatgttggtatctctttggcttacagagggttaaccaatgtctacgagatgcatgt
tctgcatcatccattccttattgtgatacttttataaactgtggagggagtggactgtat
agacagcagtggtccaatgactcgggtgcagcagcttgttttaacactggaaatgatgct
actttccaatatggaatttatgggcaggctgttttgctaactacagaagacagtgctgtt
aaacggtatatatattcattattttgggggtttcagcaaataagtaccttagctggcaac
cttgtcccaagttatttcgcatgggaagttctgttcacaatggctattattggtttggga
ctgttgcttttcgcattacttatcggaaacatgcaaaactttctccaagctcttggaaga
cggagattggaaatgcaacttaggcgccgtgatgttgaaaagtggatgagccataggcgg
ttgcctgaagatttgagaaggagagttagacgagcagaaaggttcacctgggcagctact
caaggagtgaacgaagaggagcttttgagtaatttacctgaagatattcagagggacata
cgtcgtcatttctttagattccttaataaggtccggttgttcactttgatggattggcct
atcttggatgctatctgcgacaaattaagacaaaacttatatattagtggaagtgacatt
ctttatcaaggtggtactgttgacaagatggtcttcatagtgagaggtaagctggaaagc
gtcagtgcagatggaagcaaggcccagttacatgatggagatgtttgtggagaggagctc
ctcacatggtacttggaacactcatccgtgaatagagatagtgctaaaatcaaattccat
ggcatgcggttggttgctatacgtacagtaagatgttcgacaaacgtcgaagcttttgta
ctcagagcaagtgatctcgaagaagtcacctcacaatttgcacgatttttacgtaatcca
cgagtgcagggagcaatcaggtatgaatccccttactggcgaaccattgctgcaactcgt
attcaggttgcttggaggtaccggaaaaggcgactgaagcgagctgagcagtcaaggctg
aacgaggagtcttaccccccgtattcgatcacggcccatgattcatttcgacccggacag
tggggatga
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