Panicum virgatum (switchgrass): 120657355
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Entry
120657355 CDS
T07260
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120657355
03420 Nucleotide excision repair
120657355
03430 Mismatch repair
120657355
03440 Homologous recombination
120657355
03460 Fanconi anemia pathway
120657355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120657355
03032 DNA replication proteins [BR:
pvir03032
]
120657355
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120657355
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120657355
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120657355
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120657355
MMR (mismatch excision repair)
120657355
DSBR (double strand breaks repair)
HR (homologous recombination)
120657355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
DUF223
TMEM219
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
120657355
NCBI-ProteinID:
XP_039791590
LinkDB
All DBs
Position
1N:complement(63364818..63368109)
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AA seq
653 aa
AA seq
DB search
MTAARLTPNAVAATLAGDINLKPVVQVFDLRSITVTGPPGAGPRFRAIISDGVATTQALF
AAQLCDLARSGLVRRGAIVQLLEYIVNEVNGRRAMVILNMEVLVPECEIIGNPVLPPESG
VSNSNTMRADQFNGAPGSTAGSTLTTVTRSNYNSPVIQRPMAGNLSNMIPRPSDNAQVFQ
PTVQPSYRPAPNYRNRGTIMKNDAPARIIPISALNPYQGRWAIKARVTAKGEIRRYHNAK
GDGKVFSFDLLDSDGGEIRATCFNALVDRFYEAVEVGKVYVVSRGSLKPAKKDYNHLNNE
WEIFLESQSTIELCPDENSSIPAMRFSFTSIDKIEDSENNAIVDVIGVVTSVNPSSTIQR
KNGMETQKRTITLKDMSGRSVEVTMWGDFCNREGLQVQEMVEHGAFPVLAVKAGRVNDYS
GKSVGTISSSQLLINPDLAEAHSLRQWFDCGGRDASTQSISRDFTPAASRYEIRKTVAQI
KDDGLGMGDKPDWVTVKATVVFFKTDSFCYTACPNVIGDRRCSKKVTKSDSGNWFCDKCN
QEFPECDYRYLLQLQIQDHSGTAWATAFQEPGEELLGCSARELNMLKENEDPRYTDVLLQ
GLYRQHLLRLKVKEETYGDERRVKNTVFKVERIDPSAESKFLLDHISRLTGSY
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggcgaggctgacccccaacgccgtggcggcgacgctggcgggggatatcaac
ctcaagccggtggtgcaggtcttcgacctccggagcatcacggtcaccggccccccaggc
gccgggcccaggttccgcgccatcatctccgacggcgtcgccacgacgcaggcactgttc
gccgcgcagctttgcgacctcgcgcgctccggcctcgtccgccgcggtgcgatcgtgcag
ctcctcgagtacatcgtcaacgaggttaatggaaggagggctatggtcattcttaacatg
gaagttcttgttccagagtgtgagattattggaaatccagtattgcctcctgaatctgga
gtttctaattcaaataccatgagagcagaccagtttaatggcgcacctggttcaacagca
gggagtactttgaccacagtgacaaggtccaattacaattctccagtaatccagcgaccg
atggcagggaacctttcgaacatgatccctaggccaagtgacaatgcacaggtcttccaa
ccaacagtacagccatcctatcgccctgcacccaattacagaaaccgcggcacaatcatg
aaaaatgatgctcccgctagaataatccccatatctgcactaaatccttatcagggacgc
tgggctatcaaggctcgcgttactgccaagggtgagatccgccggtaccataacgcaaaa
ggtgatggcaaagtgttctcttttgacctgcttgattctgatggtggtgagatacgggct
acgtgtttcaatgctcttgttgatcgcttctatgaagctgtggaagttggtaaggtctat
gtggtatcaagaggaagcctgaaacctgcaaaaaaggactacaaccatctgaataatgag
tgggaaattttcttggaatctcagtcaaccattgaactttgtcctgatgagaacagctcc
attcctgccatgcggtttagcttcacatcgattgataaaatcgaagattcagagaacaat
gctattgttgatgtcattggtgtcgttacatctgtcaaccccagttccacaatacagagg
aaaaatggcatggaaactcagaaaaggaccattaccctgaaggatatgtctggtcgaagt
gttgaggttaccatgtggggtgacttctgcaacagagaaggcttgcaggtgcaagaaatg
gttgaacatggggcctttcctgtgctggctgtcaaggctggaagagtgaatgattacagt
ggcaagtctgttggcacaatttcttcatctcaactcctcataaaccctgatcttgctgaa
gctcatagccttaggcagtggtttgattgtggaggtagagatgcttctactcagtccata
tccagggatttcactccagcagcatcaaggtatgagatccggaagacagtagcacagata
aaggatgatggtcttggaatgggggacaaacctgattgggtcacagtgaaggctactgtt
gtattcttcaagactgactccttctgctacacagcttgccccaacgtgattggagacagg
cgatgcagtaagaaggtgacaaagtctgactcaggcaactggttctgtgacaagtgcaac
caagagtttccggagtgtgattacaggtacctcctgcagttacagatccaagatcactcg
ggaacagcttgggcaacagcattccaagagcccggggaggagctacttggttgctcggcg
cgagaactcaacatgctaaaagagaatgaagatcctcgctacacagatgttttgctccaa
ggcttgtaccggcagcatctgctgaggcttaaagtgaaagaagaaacatatggagacgag
agacgagtgaagaatactgtgttcaaggtggagaggattgatccttcagctgagagtaaa
tttctgcttgatcacatttcaaggttgacaggatcgtattga
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