Panicum virgatum (switchgrass): 120657364
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Entry
120657364 CDS
T07260
Name
(RefSeq) protein OPAQUE1
KO
K10357
myosin V
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
120657364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120657364
04131 Membrane trafficking [BR:
pvir04131
]
120657364
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120657364
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pvir04812
]
120657364
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
120657364
mRNA cycle factors
P-body specific factors
120657364
Membrane trafficking [BR:
pvir04131
]
Others
Actin-binding proteins
Myosins
120657364
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
120657364
Cytoskeleton proteins [BR:
pvir04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
120657364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_16
AAA_10
Flp1_like
Zeta_toxin
ABC_tran
AAA_22
Chordopox_RPO7
DUF2481
Motif
Other DBs
NCBI-GeneID:
120657364
NCBI-ProteinID:
XP_039791598
LinkDB
All DBs
Position
1N:63459581..63490152
Genome browser
AA seq
1522 aa
AA seq
DB search
MSYRKGSKVWVEEKGEGWVEAEVTEAKERAVLVLTSQRKKITVSPEKLLPRDTDEDLGGG
HVDDMTKLTYLNEPGVLYNLKKRYALNEIYTYTGSILIAVNPFTRLPHLYNEYMMEQYKG
VRLGELSPHVFAVADASYRAMVNESRSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAL
DDRTVEQQVLESNPLLEAFGNAKTIRNDNSSRFGKFVEIQFDASGRISGAAIRTYLLERS
RVVQITDPERNFHCFYQLCASGKDAELYKLGHASHFHYLNQSKTYDLEGTNNEDEYWKTK
RAMDIVGISRKDQDAIFRTLAAILHLGNIEFAPGKDSDSSKIKDSTSHFHLQTAANLFMC
DADLLVSTLCSRSIHTREGIIIKALDCAAAAANRDALAKTVYARLFDWLVENINKSIGQD
VDSKVQIGVLDIYGFESFKNNSFEQFCINFANEKLQQHFNEHVFKMEQEEYKSEEINWSY
IEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHETFATKMFRNFSSHPRLEKTKFSET
DFTISHYAGKVTYQTDSFLEKNRDYIVAEHCNLLSSSRCPFVSGLFTSLPEESIRSSYKF
SSVASRFKLQLQALMETLNSTEPHYIRCVKPNSANRPQLFENQSVLHQLRCGGVLEAVRI
SLAGYPTRRTYAEFVDRFAVLVPELMIGSYDERTLTKGILEKMKLDNFQLGRTKVFLRAG
QIAILDLCRAEVLENAARHIQGRFRTFVARKEFVKTREASISVQAYCRGCLARKMYAIRR
ETAAAVIVQKYVRRWLLRRAHLQACLAALLIQSYVRGCITRRYFSAIREHKAATVIQSTW
RRRKVVMLFQHYRQATVAIQCAWRQKLARRELRRLKMAANEAGALREAKNKLEKKMDDLA
LRLTLERRLRAASEESKSSEILKRDKIIESLSAECAAAKSAAQIEHDKNLLLQRQLDDSL
REITLLQSKRIMTTEAEKENSNLKNLVESLSVKNSILEKELNVARKSSDDTMEKLKDVEG
KCNHLQQNLDKLQEKLTNLENENHVLRQKAFNTPTMNNLVVAPKTLSEKFAASTGLPKCE
SKSTFESPTPTKYLAPLTQTLTGSRRSRLPVERHEENHEILLRCIKENLGFKDGKPVAAC
IIYKCLLHWRAFESERTAIFDHVIEAINDVVKGEEADGRLPYWLSNTSALLCLLQRNLRS
NGLFATPSRRSGALGLGGKLVQTLRSPSKLVGRSDSLPQVDARYPAILFKQQLTACVEKI
FGQLRDNLKKEISPLLNVCIQAPKSTRGQPGKASKSPGVGAQPASNSNWDNIVNFLDLLM
DSLRENYVPSFFIRKLITQLFSFINIQLFNSLLLRRECCTFSNGEYVKAGLSLLEKWITD
VTEEFAGTSWHELNYIRQAVGFLVIHQKRKKTLEEIRQDLCPSLSVRQIYRICSMYWDDK
YNTQGISNEVVAAMREMVNKDTQNLVSNSFLLDDDLSVPFSTEDLSMAIPAMDYADVDLP
ESLQHYTTVQFLLRQQDPQPVQ
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgagctaccgcaaggggtcgaaggtgtgggtggaggagaagggggaggggtgggtggag
gcggaggtgacggaggcgaaggagcgcgccgtcctcgtgctcacgagccagcggaagaag
attacagtttcgccagagaaattattgcccagggatacagatgaagatctgggtgggggt
catgtcgacgacatgaccaaactgacgtatctgaatgaaccaggtgttctttacaatctg
aagaaaagatatgcactgaatgagatatatacgtacaccggaagcatcttgattgctgtt
aatcctttcacgaggctacctcacctgtacaacgagtacatgatggagcaatataagggt
gtccgattgggggagttgagtccacatgtttttgcagtagctgatgcatcgtacagggct
atggtgaatgaatcccgaagccagtccatccttgttagtggtgaaagtggtgctggcaaa
actgaaacgactaagcttattatgcagtatctcacctttgttggtggtagagctgctctt
gatgatcgaacagtcgaacaacaggttctagaatccaaccctcttttggaggcatttggc
aacgcgaaaacaatacggaatgacaactcaagccgatttggaaaattcgtggagatacag
tttgatgcaagtggtaggatatctggagcagctattaggacctatcttttggaaaggtcc
cgtgttgtgcaaattactgatcctgaaaggaattttcattgcttctaccaattgtgtgct
tctggaaaggatgcagagctgtacaagcttgggcatgcaagccattttcattacttgaac
caaagcaagacttatgatttggaagggacaaacaatgaagacgagtactggaagacgaaa
agagcaatggacattgttgggattagcagaaaagatcaggatgctatatttcggacattg
gcagccattcttcatcttggcaatattgagtttgctccaggaaaagattctgattcgtca
aaaattaaggattcaacttcacattttcacctccaaacagcagctaacttatttatgtgc
gacgcagatttattggtctcaacattgtgtagtcggtctatacatactcgtgaaggaata
attattaaagcattagactgtgctgctgccgcagctaatcgtgatgctctagcgaagact
gtatatgccagattatttgactggcttgtcgagaatattaataagtcaattggtcaagat
gttgattccaaggtacaaattggtgtcttggatatctacggctttgaaagcttcaaaaac
aacagctttgagcagttctgcattaactttgcaaatgaaaaactacagcaacactttaat
gagcatgtattcaagatggaacaggaggagtacaaaagtgaggaaattaattggagttac
attgagttcattgacaaccaggatgtgctggatttgattgaaaagaaaccgattggaatt
attgcactgctggatgaagcttgcatgtttccaaaatctactcatgagaccttcgcaaca
aagatgttcagaaacttctcttcccatcctaggcttgagaagacaaaattctcagaaaca
gattttaccatctcacactatgctgggaaggttacatatcaaactgattcttttctggaa
aagaatcgagattatattgttgcagagcactgcaatcttctatcatcttcaaggtgccca
tttgtttctggacttttcacttcattgccggaagaatctataagatcctcctacaagttt
tcgtctgttgcttccagatttaagctgcaactccaagccctcatggaaaccctaaactca
acggaacctcactatatacgctgtgtgaagcctaactctgctaatcgacctcagcttttt
gaaaatcaaagcgtcttgcatcaactgcgttgtggaggtgtcttagaggctgtccgtatt
agtcttgctggctatcctaccagaaggacttacgctgaatttgttgatcggtttgctgtt
ctagttccagagttgatgattggaagttatgacgaaagaacgctgacaaagggaattctc
gaaaagatgaagcttgataattttcaacttggtagaacgaaggtattccttagggctggt
caaattgccatattagatctgtgtcgtgctgaggttttggaaaatgctgcgcggcacatt
caaggccgtttcagaacatttgtcgcacgaaaagaattcgtgaaaacaagggaggcatca
atttctgtacaagcatattgcagaggctgtttggcaaggaagatgtatgcgatcagacga
gaaacagctgcagctgtaattgttcagaagtatgtccgaagatggctgctacgccgagct
cacctgcaagcatgtttggcagctttgcttattcagtcttatgttcgagggtgtatcact
cgccgctatttctcagccattagggagcataaggctgccacagtgatacagtctacatgg
agaaggcggaaggttgtaatgcttttccagcattacaggcaagccacagtggcaattcag
tgtgcttggagacaaaagcttgcaagaagggagctacggagacttaaaatggctgcaaat
gaagctggcgcgttgcgtgaggcaaagaataagcttgagaaaaagatggacgatcttgct
ttaagacttacccttgaaaggagactgcgggctgccagtgaagagtcaaagtcatcagaa
atattgaagcgtgacaaaataattgaatcattaagcgcagaatgtgctgctgctaagtca
gctgcccaaattgaacatgacaaaaatttgttgctccagaggcagttggacgattctttg
agagagatcacgctgttgcagagtaaaagaattatgaccacagaagcagaaaaagaaaac
tccaacctaaagaatttagtcgaatcattatctgtgaaaaactcaatactggagaaagaa
cttaatgtggctcgtaaaagtagtgatgatacaatggagaaattgaaggatgtggaggga
aaatgcaaccatctacagcaaaatttggacaaattgcaggagaaactcactaatttggaa
aacgaaaatcatgtcctaagacagaaggcatttaatacaccaacaatgaacaatctagtt
gtagctccaaagacattatctgagaaatttgctgcatcaaccgggcttcccaagtgtgag
tcgaagagtacatttgaaagcccaacaccaacaaaatatctggctcctcttacacagact
ttgactggatcgcggagatcaaggttgcctgttgaaaggcatgaggaaaatcatgaaatt
ttgttaagatgcatcaaagaaaatttaggctttaaagatggcaaaccagttgcagcctgc
atcatttacaaatgccttttacactggcgtgcttttgaatcagagaggactgctatattt
gatcatgtaattgaggccataaatgatgtcgtaaagggggaggaagctgatgggagatta
ccttattggttgtccaatacttctgcattgctatgccttctgcagaggaatctgcggtca
aatggattatttgctacaccatctcgtcggtctggagctctagggctaggcgggaagcta
gtgcaaacgctgaggtctccttcaaagcttgtaggccgcagtgattctctgccacaagtg
gatgcgcggtatccagccatactattcaaacagcagcttactgcatgtgtcgaaaagatc
tttgggcagctcagagataatctgaaaaaggaaatatcacctcttcttaatgtttgcatc
caggctccaaagtcaacacgtgggcaacctggaaaagcatccaagtcacctggggttggt
gcccagccggcatcaaattctaactgggacaacattgtcaatttccttgacttgcttatg
gattcattgcgagaaaattatgtgccatccttctttattcgtaaacttatcacacaatta
ttctcattcatcaatatacaattgtttaacagtcttcttctccggcgtgaatgttgtaca
ttctccaatggggaatacgtgaaagctgggctatccttgttggagaaatggattactgat
gtcacagaggagtttgcggggacatcttggcatgagctaaattatatcagacaagctgtt
ggttttttggttatacaccaaaaaagaaaaaagacacttgaggagatcagacaagatctt
tgcccgtccttgagtgttcgccaaatctacaggatatgctcgatgtactgggatgacaaa
tacaatacccaaggcatatcaaacgaggtggttgctgcaatgcgggagatggtcaacaag
gatacccagaatcttgtgtcaaattcttttttgttggatgatgacttaagtgtaccattc
tctaccgaggatctgtccatggctatcccggcaatggattatgctgacgtcgatcttcca
gaatctcttcagcactatacaacagtacagtttctactcagacagcaggacccacagcct
gtccaatag
DBGET
integrated database retrieval system
