Panicum virgatum (switchgrass): 120657436
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Entry
120657436 CDS
T07260
Name
(RefSeq) cyclic nucleotide-gated ion channel 17-like
KO
K27629
cyclic nucleotide gated channel 17
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
pvir04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120657436
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
120657436
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120657436
Ion channels [BR:
pvir04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120657436
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Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
120657436
NCBI-ProteinID:
XP_039791674
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All DBs
Position
1N:complement(64303038..64309998)
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AA seq
699 aa
AA seq
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MDCDLFAAWWRSSTGLFSRIFRGSADPLGPLPMKPAIPLHQKQAGLAASKLGVGTSKKHR
AFVAGDEQWYNKIFDPSSDFILTWNRVFLVSCFAALFIDPLYFYVPKISYGSPNSCVGTD
THLAVIVTLLRSVADLLYVMHIIIKFRTAYINPSATLRVFGRGDLVTNPKEIAWKYLRSD
CAVDVVAALPLPQIIIWFVIPAIKYSTSEHNNNILVLIVLAQYLPRLYLIFPLTYEIVKA
TGVVAKTAWEGAAYNLVLYLIASHVLGALWYLLSVDRQTACWKMNCRDEIGCAIKFLDCD
DTPNETWANTTTTFSKCNASNGTIDFDFGMFLPALQNQAPAKSFVMKYFYSLWWGLQNLS
CYGQTLVVSTYLGETLYCIFLAVLGLVLFAHLIGNVQTYLQSITVRVEEWRLKQRDTEEW
MRHRQLPHELRERVRRFIQYKWLATRGVNEESILQALPADLRRDIKRHLCLGLVRRVPFF
SQMDDQLLDAINERLVSSLCTKGTYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSI
TLKPGDFCGEELLGWALVPKPTTNLPSSTRTVKALIEVEAFSLQAEDLKFVASQFRRLHS
KKLQHTFRYYSHHWRTWASCFIQAAWRRYKRRKMAKDLSMRESFNSIRLDEVDEEDESPA
KNSLALKFIARTRKVPQSTKELPKLRKPDEPDFSAEPDD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggactgcgatttgtttgctgcgtggtggagaagctcaacaggattgttctccagaatt
tttcggggatcggctgatcccctggggccgctgccaatgaagccagccataccgcttcac
cagaagcaggcggggctcgcggcgagcaagctcggtgtggggacctcgaagaagcacagg
gcttttgtagccggcgatgagcagtggtacaacaagatttttgatccgtcaagcgacttc
atcttgacatggaaccgcgtcttcctcgtctcctgcttcgccgcgctatttatagaccct
ctctacttctatgtgcccaagatcagctacggtagccccaattcctgtgttgggacagac
acccatttagccgtcattgttaccttgcttcgatcagtcgccgatttgctatacgtcatg
cacatcataatcaagttcagaaccgcatatatcaatccaagcgcaactctgagggtgttt
ggaagaggagatcttgtcacaaatcccaaggaaattgcgtggaagtatttgagatctgac
tgtgcagttgatgtggtggctgcattgcctttgccacagatcattatctggtttgtgata
ccagctataaagtattccacttctgagcataacaataacattctggttcttattgttctt
gctcagtatctcccaagattgtatctcatattccccttaacttatgaaattgtcaaagct
actggagttgtcgcaaagactgcttgggaaggggccgcatacaacctggtgctctatctg
atagctagtcatgttctcggtgcactatggtatttgctatctgttgatcgccagacagcc
tgctggaagatgaattgcagggatgaaattggttgtgctattaagttcctagattgtgat
gacacaccgaatgaaacttgggcaaatactacgaccaccttcagtaaatgtaatgctagc
aatggcaccatcgattttgattttggcatgttcctgcctgcgctgcaaaatcaagcacct
gctaaaagttttgtgatgaagtatttctactccctctggtggggtttgcaaaatttaagc
tgctatggccagactcttgttgtgagtacctatcttggtgagactctgtattgtatattc
ttggcggtacttggtcttgtcttgtttgcgcatttgattggaaacgtgcagacctacctg
caatctatcaccgtgagggttgaggaatggagattaaagcaaagagatactgaagagtgg
atgagacatcgccaactgcctcatgagctgcgggaaagggtgagacgatttatccagtac
aagtggcttgccactcggggtgtgaatgaagagtcaatattgcaggccctaccagcagat
cttcggcgtgacattaaacgccacctttgcttgggtcttgttcgacgggttccatttttc
tcccagatggatgatcaacttcttgacgccatcaatgagcgtcttgtatcatcactttgc
acaaagggcacatatatcgtccgtgaaggtgatccggtgactgagatgctgtttatcatt
cgtgggaaactggaaagctccacaacaaatggtggccgcacaggctttttcaattcaatt
actctgaaacctggtgatttctgcggtgaggaacttcttggatgggctcttgtccccaag
cctactaccaacttgccttcatccactcggactgtgaaggccctcatagaagttgaggcc
ttttccctccaggctgaggatctcaagtttgttgccagtcagttcaggcggttgcacagc
aagaagttgcagcacactttccggtactactcgcaccactggcgaacctgggcctcgtgc
ttcatccaagctgcttggcggcggtacaagaggaggaagatggcaaaggacttgagtatg
agggagtcattcaattccattagattagatgaagtggatgaggaagatgaatctccagcc
aagaatagtctggcactcaaattcatagctaggactaggaaagtgcctcagagcacgaaa
gaattgcctaagctaaggaagccagacgaaccggatttctccgctgaacctgatgactaa
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