Panicum virgatum (switchgrass): 120657442
Help
Entry
120657442 CDS
T07260
Name
(RefSeq) probable E3 ubiquitin-protein ligase XBOS32
KO
K19044
E3 ubiquitin-protein ligase XBAT32/33 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120657442
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120657442
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120657442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_5
Ank_3
RING_XB3-XBAT31
zf-C3HC4
zf-RING_2
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
120657442
NCBI-ProteinID:
XP_039791679
LinkDB
All DBs
Position
1N:64370476..64374544
Genome browser
AA seq
495 aa
AA seq
DB search
MGFLSLVGNSFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAA
QGHHEIVSLLLESGVEINLRNYRGQTALMQAGQYGHWEVVQTLILFNANVHRTDYLNGGT
AVHFAALHGHARCLRLVLADYVPSIPNFFTQTNHRSSEEDSTTDFDHDALVKMVNQKADG
GLTPLHMAALNGHVECVQLLLDLGASVFEVTIEDGTTIDLIGAGSTPLHYAACGGNAVCC
QLLMARGASITAQNASGWTPLMVARSWQRNSIEEILSKEPEGQIRTLPSPYLCLPLMSIM
NIARECGWRYLNQSPVCIDPCAVCLEGSCSVAAEGCKHEFCTRCALYLCSTSYTSVSPAG
AIPCPLCRHPIISFITLPGTSPIRELPRNSLSLSFCTTCPAVNSDSSASIAAHLYRSEFQ
CGRMPPMGSSSFRSLSCQRIPAMKLNPAFCMGMDTNPCLLRCSRFGSSLRRSASQGETTR
RAWPVTFNPIVATGN
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgggattcctcagtcttgtgggcaactcctttgggtgctctgcttccggtgagcggctt
gtctcagctgcccgcgacggcgacctgcaggaggcgcgtgcgctcctcgagtacaaccct
cgccttgcccggtactccacatttggcggccgcaactcaccgctgcactatgccgctgcg
caaggccaccatgagattgtgtctctattgcttgaatccggcgttgagatcaaccttagg
aattacaggggccagactgctttgatgcaagccggtcaatatggccactgggaggttgtt
caaacactgattctcttcaatgcaaatgttcacaggacagattatctcaatggtggaact
gctgtccatttcgctgcactgcacggtcatgcccgatgccttcgtcttgttcttgcagat
tacgtgccaagcataccaaatttcttcacccagacaaatcatagatcatctgaagaagat
tcaactactgattttgatcatgatgctttggtcaagatggtaaatcagaaggcagatgga
ggcttaaccccacttcatatggcagcgttaaatgggcatgtagagtgcgtgcaactttta
ctggacttaggagcatctgtttttgaggttactattgaggatggaacgactatagattta
ataggagctggtagcaccccacttcactatgctgcttgtggtggaaatgctgtctgttgt
caactccttatggctcgaggagcttccattactgcacaaaatgctagcggatggacccca
ttgatggtggctcgttcctggcaacggaattcaattgaagaaattttaagtaaagaacca
gagggccagatacgcactcttccatctccatatctttgtcttccactcatgagtatcatg
aacattgcaagggagtgtggatggagatacctgaaccagtcacctgtttgtattgacccc
tgcgctgtctgcttagaagggagctgttctgttgctgcagaaggttgcaaacatgaattc
tgcacaaggtgtgctctatacctttgttcaactagctacacatcagtgagcccagcgggc
gcaataccatgtcctctctgtagacatccaatcatatctttcatcactcttcctggcacg
agccctataagagagctgccgagaaacagcctttcattgtcattttgcacaacatgccca
gcagttaactccgattcttctgcttcgattgctgcccatctgtatcggtctgaattccag
tgtgggcgcatgccaccgatgggctcgtcctccttccgctcgctgagctgccagaggata
ccagcgatgaaactgaacccagcattttgtatgggcatggacacaaatccctgcctttta
agatgctcgaggttcggatctagcttgcggcgctcggcttcccaaggagagactaccaga
agagcctggccggtaacctttaacccaattgttgctactggcaactga
DBGET
integrated database retrieval system
