Panicum virgatum (switchgrass): 120657457
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Entry
120657457 CDS
T07260
Name
(RefSeq) protein TSS-like isoform X1
KO
K03255
protein TIF31
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pvir03012
]
120657457
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120657457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_10
eIF3_p135
TPR_NPHP3
TPR_2
CLU_N
CLU
TPR_9
PAM2
TPR_MalT
TPR_8
DUF5969
EAD9
Motif
Other DBs
NCBI-GeneID:
120657457
NCBI-ProteinID:
XP_039791697
LinkDB
All DBs
Position
1N:complement(64485293..64504091)
Genome browser
AA seq
1791 aa
AA seq
DB search
MAPKAGKAKPKGKGDKKKKDEKVLPTVLDVIVETPDYTQLTLKGISTDRILDIRKLLAVH
VDTCHLTSYSLSHEVKPSGPSPSLAAQIRLEIHEADCRVRFSTRKVRGAQLKDTVEVASL
KPCHLSIVEEDYTEELAVAHVRRLLDIVACTTAFGAKKPDQKPASSNAAAAAAEAAKPES
PGKAAPGGGGGGEEPMYPPPKLRQFYDFFTFSHLTPPLHYIRRSTRPFVDDKREDDFFQI
DVRVCNGKPVTIVASQAGFYPAGKRALISRSLVGLLQQTSRPFDGAYKALMKAFVEHNKF
GNLPYGFRSNTWVVPPVVADSPSVFPPLPTEDETWGGNGGGQGRDGKHDHRPWVKEFAIL
AAMPCKTAEERQVRDRKAFILHSLFVDVAVLKAVASIQQLISNHTSSHETANGTTDPLLH
TEQVGDMKIVITKDKADASSKLDVKLDGSQAPGMSSDELAQRNLLKGITADESATVHDTA
TLGVVIVKHCGYTAVAQVPVHTDLTSTSLAQQDIHIEDQPEGGSHALNVNSLRMLLHKSC
AQSSGGVQRLQSFDPQDNETTQNFVRKILTDSLQKLESEAPMVTRPIRWELGACWVQHLQ
SQASEKIETKKSDETKDVPTVKGLGKQFGQLKEIKKKTDDKSGKGSYAKENSSPNTDNTH
TDNTTSAKEDKEDVLQGLLPEAAFQRLKESETGLHAKSLDELIEMAHKYYDDVALPKLVA
DFGSLELSPVDGRTMTDFMHTRGLQMRSLGRVVELSDKLPHIQSLCIHEMVVRAFKHILR
AVIAAVDDINDMADSVASCLNILLGPFPEENNGNCGEDHNLRKRWLEVFLIKRFGWKWKD
EYFLDLRKYAILRGLCHKVGLELVTKDYDMDMPHPFRKSDIISVVPIYKHVACSSADGRT
LLESSKTFLDKGKLEDAVNYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT
IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSH
PNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLME
AYSLSVQHEKTTLRILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASIA
SRGHLSVSDLLDYINPDDELKAKEMQKKQARAKIKGRTGQNPSDLVDDEDQRSPPPNNDN
LVTEKEDFEVKENGTFVEHVKVKDEIPSDTTVHITQDDFIEEYTFDEGWQAAVPKGRSIG
SRKTGSGTRKPNLTKLNTNAFHSENGRYKGRVPSNFSPRVSPNETAAPVASSPLAKKLAK
NSSFNSKAVSPAILSSSGENSSNPNSKPASPAITAATAKVIPSTAPTASQTVRKSLSYKE
VAIAAPGALVKALSEVHTEEKDTVDQGASVESTKPPKESNGHPCGEKDGATEVSQKGDTS
QVSKSIDGGKSKHDVLAGSNQPETEHKKTTDAAKISVAEKTTDLASSVTSSATQTEADVP
NVEAQTVIEANDSSSNDDERDAGEDTPEQLSSGGENEKSSPSESEKKETTSKLSAAAAPF
NPSTVPAFGSMAVPGFREHGGLLPSPANVPPMLSIPHRKHPHQSATARVPYGPRLGGGYN
RSGHRGPRNKPVLPSGEAPTETNTSAPRVMNPNAPEFVPGQSRSPSGHPASPNGPLTSPG
GIPSSPQDLPSSPDSTLESPATASPQVSECSQTNPEGNDASNGINVEAGGETQTTDDTSQ
YGEVEPEQTVAPEVAEAVPAKDVTEELITTGQPKSWADYSDGEVEAVEVAG
NT seq
5376 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaaggccgggaaggccaagcccaagggcaagggcgacaagaagaagaaagat
gaaaaagtgctgcccaccgtgctggacgtcatcgtcgagacgccggactacacgcagctc
acgctcaagggcatatcaacggacaggattctcgacatccgcaagctcctggccgtccac
gtggacacctgccacctcaccagctactctctgtcccacgaggtaaagccctcgggccca
agcccatccctagcggctcaaatccgcctcgagattcacgaagctgactgtcgcgttcgt
ttctccacgcgcaaggtccgtggggcccagctcaaggacacggtggaagtcgcctccctc
aagccctgccacctcagcattgtcgaagaggactacacggaggagctcgccgtcgcgcac
gtgcggcggctgctcgacattgtcgcctgcaccaccgcatttggcgcgaagaagcccgac
cagaagcccgcttcctccaatgcggcagcagccgcggccgaggctgccaagcccgagtcg
cccgggaaggcggcgcccggcggcggaggaggcggtgaggagcccatgtacccgccgccg
aagctgaggcaattttacgacttcttcaccttctcgcacctcacgccgcctctgcattat
attcggagatcgacgcgtccattcgttgatgacaagagagaggatgacttcttccagatc
gatgtaagagtttgcaatgggaaaccagtgacgattgtggcatcccaagcaggattctac
cctgcaggaaagcgtgcactcatcagccgctcccttgttggactgctgcagcagacaagc
cgtccatttgatggagcttacaaggctctgatgaaggcatttgtcgagcacaacaagttt
ggaaatcttccttatgggttccgatcaaacacctgggtggttcctcctgttgtagccgat
tcaccatcagtgttcccacctcttccaactgaagatgaaacttggggtggcaatggtggt
ggtcaaggaagagatggaaagcatgaccatagaccatgggtgaaagaatttgccatcctt
gctgcaatgccttgcaaaacagctgaggagaggcaagtcagagacagaaaagctttcata
ctccacagtttattcgtagatgttgctgtcctcaaagctgttgcatccattcaacaactg
atttccaaccatacaagttcacacgaaacagcaaatggcaccacagatccactcttgcac
acagagcaagttggtgatatgaaaatagtgatcacaaaggacaaagcagacgcaagttcc
aagttagatgttaagttggatggaagtcaggctccagggatgtcttctgatgagcttgct
cagaggaacttgttgaaaggcatcactgctgacgagagtgcaacagtacatgacactgct
actcttggtgtggtcattgtaaagcattgtgggtatacagctgttgcccaagttccagtg
catactgatttgacaagtacttctctagcacagcaggacatccacattgaagaccagcct
gaaggaggtagccatgctcttaatgtcaatagtttaaggatgctgcttcataaatcatgt
gcccagtcatctggaggagttcagcgattgcagagctttgatcctcaagacaacgagact
actcaaaattttgtccggaagatactgacagacagcttgcaaaagcttgaaagtgaggct
ccaatggtaacaagaccgatcagatgggaacttggcgcttgctgggtacaacatctacaa
agccaggcttctgagaagatagagactaaaaaaagtgacgagactaaggatgttcctaca
gtaaagggcctgggtaaacaatttggtcagttaaaggagataaaaaagaagacagatgac
aagagtggaaaaggttcatatgcaaaagaaaacagttcacctaatacagataatacacat
actgacaacactaccagtgcaaaggaggataaagaggatgttcttcagggactgcttcca
gaagcagctttccaaaggctaaaggaatctgaaactggacttcatgctaagtcactggac
gaattgattgaaatggcacacaagtattatgatgatgttgccctgccaaaattggtagca
gactttggttcacttgagctttcccctgttgatggacggacaatgacagattttatgcac
actaggggccttcagatgcggtcactgggacgagtggttgaactttctgataagctccca
cacatacaatccttgtgtatacatgagatggtagttcgagcatttaagcacatacttcgg
gctgttattgcagctgttgatgacataaatgacatggctgactccgttgcatcatgttta
aacattttgctgggaccattcccagaagaaaacaatggcaattgtggtgaggatcataat
ctcaggaaaaggtggttggaggtctttctaataaagagatttggatggaagtggaaagat
gaatatttccttgatctaagaaaatatgccattctacgtggtctctgccataaggtagga
cttgagttagtaaccaaagattatgacatggatatgccgcatccattcagaaagtcggat
attataagtgtcgttcctatctacaagcatgtcgcatgctcatcggctgatggccgcacc
ctgctggagtcatccaagacttttctagataaaggaaaacttgaggatgctgttaactat
ggcacaaaggctcttgcaaaacttgttgctgtttgtggcccatatcaccgaatgaccgca
ggagcatacagccttcttgcagtagtgctttatcatactggcgatttcaaccaggcaacc
atctatcaacagaaggctttagatattaatgagagggaacttggacttgaccacccagat
acaatgaaaagctatggagatcttgctgttttctactatcgcctgcaacatacagaactg
gccctaaaatatgtgaatcgtgccctatatcttttgcacctcacatgtggcccttctcat
cctaacactgctgcaacttacatcaatgtcgcgatgatggaagaagggttgggtaatgtc
catgttgcactccgttacctgcacgaagctctaaaatgtaaccaacgtctgcttggcgct
gatcacatacagactgcagctagttatcatgctattgctattgctttgtctttaatggaa
gcatactcgttgagtgtccaacatgaaaagactactttaagaatacttcaagcgaagctt
ggatcagaagatcttcgaacccaggatgctgctgcttggttggaatacttcgagtctaag
gcattagagcaacaggaagcagcacgtaatggtactccaaagcctgatgcttcaatagca
agcagaggacatctgagtgtatcagatctattggattatatcaatccggatgatgagctc
aaggctaaggaaatgcaaaagaaacaagcccgtgctaagatcaaaggccgcactgggcaa
aacccatctgacctggttgatgacgaagatcaaaggagccctccacctaacaatgataat
ttagtaactgagaaggaagactttgaagttaaagagaatggaacctttgttgagcatgtg
aaagtgaaagacgaaataccaagtgatactacagtccacataactcaagatgattttatt
gaagagtacacatttgatgaggggtggcaagcagctgttccaaaaggacgatccataggg
agccgcaaaacaggttcaggcacaaggaagccaaatctgacgaaactcaatactaatgca
tttcacagcgagaatggaagatacaaaggaagggttccatccaatttctcccctcgagtt
tcaccaaatgagactgcagctcctgttgcgtctagtcctcttgcaaagaaattagcgaag
aattcaagcttcaattccaaagcagttagccctgcaatcttatcaagcagtggtgagaat
tcttccaatcccaactccaagccagcaagccctgcaattactgcagctactgccaaggtg
ataccatccacagcaccaactgccagtcaaactgtaaggaagtcactttcatacaaggaa
gtggcaatagctgcaccaggagctcttgtcaaagcattgagtgaggtacatacagaagaa
aaggatacagttgaccaaggtgcaagtgttgagagtactaagcctccaaaagaaagcaat
ggtcacccttgtggagagaaagatggagcaacagaagtgtcgcaaaagggtgatacttcc
caagtatcaaaatcaatagatggaggtaaatctaagcatgatgttttggctggttcaaat
caaccagagacagaacataaaaagaccacagatgcagcaaagatatctgtagcggaaaag
accacagatcttgcttcctcagtcacatcatctgcaacacaaactgaggctgatgttcca
aatgtggaagcacaaactgtaatagaggcaaacgattcttcctctaatgatgatgaaaga
gatgcaggagaggatacaccagaacaactgtcaagtggaggggaaaatgagaaatcttca
ccgtcagagagtgaaaagaaagagacaactagtaaactttctgctgcggcggctccattc
aatccatccaccgtaccagcttttggttcaatggctgtaccaggttttagagaacatgga
ggactattgccatcacctgctaatgtaccccctatgttgtcaatccctcaccgtaagcac
cctcaccaatctgcaacagcaagggtcccttatggtccgcgtctcggtggaggttacaac
agatcggggcaccggggacctcgtaacaagcctgtgttgccaagtggtgaagcacctaca
gaaacaaatacatctgcccccagagttatgaaccctaacgctccagagtttgtaccaggc
caatctcggagtcctagtggacatccagcatctccaaatggtcctttaacatcaccaggt
ggtattccatcttccccacaggaccttccttcctctccagatagtactttagaatcaccg
gcaactgcatccccacaagtttctgaatgtagccagaccaatcctgaaggaaatgatgca
tctaacggaatcaatgttgaggctgggggtgaaacgcagaccacagacgacacaagccaa
tatggagaagtggagcctgagcagaccgtagcccctgaagttgcagaagcagtgccagcg
aaagatgttactgaagagttaattacaaccgggcaacccaaatcctgggctgactacagc
gatggagaggtagaggctgttgaggttgcaggctga
DBGET
integrated database retrieval system
