Panicum virgatum (switchgrass): 120657475
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Entry
120657475 CDS
T07260
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 23-like
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120657475
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120657475
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120657475
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120657475
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120657475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Peptidase_C98
Motif
Other DBs
NCBI-GeneID:
120657475
NCBI-ProteinID:
XP_039791722
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All DBs
Position
1N:64654043..64660471
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AA seq
1076 aa
AA seq
DB search
MGEAAAEELLHRRIEFHAATRPRPPTASAAAMPGGFRMERSLFAAADNRVAAAWGGPEGK
MFDNGESSGGGFQLSAARFYLRRIGAGLHNLGNTCYLNSVLQCLTYTEPFVAYLQSSKHR
SSCQTPGFCALCALQNHVRSALQSTGKILTPMQFVKNLRCISRSFRNSRQEDAHELMVSL
LESMHKCSLPSGIPSESPSAYEKSLVHRXRLRSQVRCTRCSHCSNKFDPFLDLSLDIGNA
TTLMKALYNFTEEELLDGGEKHYSCTRCKQKVAAKKMFLIDKAPSVLTIHLKRFSPFNPL
QKIDKKVDFQTTLNLKPFVSNSEGTDLKYSLYGVLVHAGWNTQSGHYYCFVRTSSGLWHN
LDDNKVRQVREADVLRQKAYMLFYVRDEVRNSVIHRGNGAASLSEKERISKKIACMNGAI
RSGLMEKTLYFPSISKEDMKLQKHDPDNGQPSDITATSQGQCSNEHSTTEVINASTSKNN
EPEEKAPHALPDGADTLSTKAEQIALGVQREIISPGQPDVCILEMRSQKLNPDNGQSNNS
SASSQEQCSHEHGNTEVTKDSTSQNNEPVQKASCSHVAATATFSTKTEQTALINQRETIS
TAQPDVCIICDASSDQKVYEKPLQELQLEPDGALTDSGKDFPASAQPDACSLCDASSDQK
AHEKPLQDLQLEPDGALTDSGKDTPASVFESCNGADGLLRANKQTNEPRIDAFCKPCPNS
DATIIAPVVLTEDTAVSDDTITGNEDSIHGIEAKGTEPVKQYDGLIVVKELSVETIDDKV
KAEEQTAVQNNTLGDGQSMVKEVSLMETGHMADAEYQVVDKDRGPRHGSLHKNIKIKSKK
HVNYPAANFYFGSKQLLLASLKPRKKRKHKRTRRLSTSDVNPESIANDQQTSTSETVLSS
GISCKSQRRKHSHNTASSEDAIHMYKKKQNVGNSCAAELTIDKEVSKDATFAGAELGSSF
RSCVSNPDAGKCGDTDKKGSWHFDLLTRGLRVPRWDDDDMRNTKAAELQYSSATSIGYVL
DEWDEEYDRGRTKKVRKSKRDFSGPNPFQEVENIRSRQRRRLQTDQIRSGHGPLRI
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgggggaggcggcggcggaggagctgctgcatcgaaggatagagttccacgccgccacc
aggccccgtccgccgacggcgtcggctgcggccatgccgggagggtttcggatggagagg
agtctcttcgcggccgctgataaccgcgtggcggcggcgtggggtgggccggagggcaag
atgttcgacaatggggagagcagcgggggcgggttccagctcagcgccgcgagattctac
ctgcggagaatcggtgctggcttgcacaatcttggcaatacatgctacctcaactcggtt
ctgcaatgcttgacgtataccgagccattcgtggcctacctgcagagcagcaagcacaga
tcctcgtgtcagactcctggattctgtgcattatgtgctctccaaaaccatgttaggtct
gctctacagtcaactgggaaaattctgacaccaatgcagtttgtcaagaacttaagatgc
atttctcgtagttttcgtaactctaggcaggaagatgctcatgagctaatggttagcttg
cttgagtcaatgcacaaatgctctttaccatctggtataccaagtgagtctccaagcgct
tatgagaaaagtctagttcacagannccgcttaagaagtcaggtgagatgtacaaggtgc
tcacactgttcaaacaaatttgatcctttcctggatctcagtcttgacataggcaatgct
accacattgatgaaagcactttataattttaccgaggaggagctattagatggtggggaa
aagcactacagctgcacccggtgcaagcagaaagttgcagcaaagaaaatgtttcttatt
gataaggctccttctgtgttgacaattcatctgaaacgctttagtcctttcaaccctctt
caaaagatcgacaaaaaggtggattttcaaacaactttaaacttgaagccatttgtaagc
aattcagaaggtacagatttgaaatatagcctctatggtgttttggttcatgctggttgg
aatacacagtcaggtcactattattgcttcgttcggacatccagtggtctatggcacaat
cttgatgataacaaggttcgccaagtccgtgaggcagatgtgctaaggcagaaagcatac
atgttattttatgtgcgtgacgaagtaaggaattctgtaattcatagaggtaatggtgct
gccagtttgtcagaaaaggaaaggatatccaagaagattgcatgtatgaatggtgcaatt
cgaagtggtttaatggaaaaaactttgtattttccctcaatttccaaagaagatatgaag
ttgcagaagcatgacccagataatggtcagcccagtgatattactgccacttcacaaggc
cagtgttcaaatgagcatagcaccactgaagttatcaatgcttcaacatccaaaaacaat
gaaccagaagagaaagccccacatgcactcccagatggtgcagataccttgtccaccaaa
gcagagcaaatagcactgggtgttcagagggagataatatctccaggacaacctgatgtt
tgtattcttgagatgagatcacagaagctgaacccagataatggtcagtccaacaatagt
agcgccagttcgcaggaacagtgttcccatgaacacggaaacactgaagttactaaagat
tcaacatcccaaaacaatgagccagtacagaaagcctcatgctcacatgttgcggctact
gctacattctccaccaaaacagagcaaactgcactaattaatcaaagggagacaatttct
acagcacagcctgatgtttgtattatctgtgatgcaagctctgatcagaaggtatatgag
aagccattacaggaattgcaacttgaacctgatggtgcactaactgattcaggcaaagac
ttccctgcttctgcacagcctgatgcttgtagtctctgtgatgcaagctctgatcagaag
gcacatgagaagccattgcaggatttgcaactagaacctgatggtgcactcactgattca
ggcaaagacacccctgcttctgtgtttgaatcatgcaatggtgctgatgggttattgagg
gcaaacaagcagactaatgaacctcgaattgatgcattttgcaaaccatgtcctaatagt
gatgcaacaatcattgcaccagttgtcctgactgaggatactgctgtttctgatgataca
ataacgggcaatgaagattcaatccatggtattgaagctaaagggacagagcctgttaag
caatatgatggactaattgtggtgaaggagctttctgtggaaacaattgatgataaagta
aaagcagaggagcagactgctgtgcagaacaatacactgggggatgggcagtctatggtt
aaggaagtctctcttatggaaactggccatatggcagatgcagagtaccaggtggtagat
aaagataggggtccacgccatggcagtctgcataaaaatattaaaatcaagtcaaagaag
catgtgaattatccagctgccaacttttattttgggtccaaacaactgttgttggcgtca
ctgaaaccacgcaagaaaaggaaacacaagagaactagaaggctttcaacatcagatgta
aaccctgaaagtattgccaatgatcagcagacatcaacatcagaaactgttcttagtagt
ggcatatcatgcaaatcccagagacgaaaacactctcataacactgcaagttctgaagat
gctatacacatgtataaaaagaaacaaaatgttggaaactcctgtgctgctgaacttacc
atagacaaggaggtcagcaaggatgcaacttttgctggtgctgagctaggaagctcattc
cggagctgtgtgtcaaatcctgatgcaggaaaatgtggggatacagataagaaaggctcc
tggcattttgacctcctcacaaggggtttgagagttccacgatgggatgatgatgacatg
cgaaataccaaggcggcagagctgcaatattcgagtgccaccagcattggctatgtttta
gatgaatgggacgaggagtatgaccgcgggaggacgaagaaggtgaggaaatcaaagcga
gacttcagtggaccgaacccttttcaagaggtggaaaacatcagatcacggcagcggagg
agattgcaaactgaccagatcaggtccgggcacgggcctctaaggatatga
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