Panicum virgatum (switchgrass): 120657484
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Entry
120657484 CDS
T07260
Name
(RefSeq) serine/threonine-protein kinase VPS15-like isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120657484
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pvir01001
]
120657484
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120657484
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
120657484
Protein kinases [BR:
pvir01001
]
Serine/threonine kinases: Other
VPS15 family
120657484
Membrane trafficking [BR:
pvir04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
120657484
Autophagy
Autophagosome formation proteins
PI3K complex
120657484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
WD40
Pkinase
WD40_Prp19
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_C
HEAT
PK_Tyr_Ser-Thr
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
Beta-prop_EML_2
PEP5_VPS11_N
Kinase-like
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
NBCH_WD40
APH
Cohesin_HEAT
Tti2
TCAD9
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
120657484
NCBI-ProteinID:
XP_039791731
LinkDB
All DBs
Position
1N:complement(64731687..64743292)
Genome browser
AA seq
1470 aa
AA seq
DB search
MGNKIARTTQASATEYYLHDLPSTYNLVLLDVVTRGRCLKSIRCKHDEGLLLVKVYFKRA
GEPIDLREHERRLERIRNALKGIEGSHVWPFQVWLQTDKAAYLLRQYFFNNLHDRLSTRP
FLSQIAKKWLAFQLIHAVEQSHSKGVCHGDIKCENVLVTSWNWLYLADFASFKPTYIPLD
DPSDYSFYFDTGGRRRCYLAPERFYEHGGESQVAVDAPLQPSMDIFSLGCVIAELFLGGQ
PLFEYAQLLSYRRGQHDPMIALEKIQDSGIRDMILHMIQLDPKKRLPCRSYLQKYESVVF
PFYFSNFLHKFFADIVPIDSDARVEKTQENFEKILEIMMGSSTIEQIERSTLSQHSEPSE
RKGTGRRILNSPGDSKKNTSVVKKHTPVDHQHIAGDINFLLKEVENRSNSTSTKVTKDMD
HIRPSQLVNPAGSRTGSGLMAQNNVVSHVQKISKSNLCSLVAGYDGQSDTYSFDIFQQTD
SKVSCEGMVLLASLLCSCIRSVKKPELRRASLILLKFSSTYVDDDSRLQLVVPYVIAMLS
DPAAIVRCAALETLCDVLCLVQDFPISDAVIFPEYILPMLSLLPDDTEESVRVCYASNIH
KLALTAYRFLLRSRSIADIGPLDESVEAPRSQSASSPVKKQDKIYGQLAELRKNIYEIVQ
DLAMGQKQTPNVRRALLQDIGYLCYFFGHKQSNDFLLPILPAFLNDHDEQLRAVFFGQIV
FVCYFIGSRSVEEYLLPYLEQALSDGMEAVLVNALDCLSMMCKSGYLRKRVIVGLLGKAL
PLLRYPINWVKQSALRFVAACSESLGAVDTYVYLTPHLRQFLHREPPSLSSETALLSCLK
PPLPKSIFYEALEDAQDMGDILLKGGGKKELIVHGGKYPGKVQSGSSINFEDVARLKGPN
ILSNISLDVKDSVSPDKSLYSGFALHASAGNSSFYDGLSKGIPSYSVCTDKRGLGETHVV
PDSSVYKASIRLPWLEPNRPGVQTRDDYFSSKRRDLSINDSMKSSSSLQGDSMPNSDIGG
LPSFSRSAMNLEAGWKPRGILVAHLQEHRSSVNDIAVSNDNTFFVTASDDSSIKIWDTRR
LEKDIAFRSRLTYSMGTSQALCTTMVRGTSQIVVGGSDGTLHLFSVDCARGVGSVVERYS
GIVDVKRNDIKEGSILSVVNCSSDSFSPTVLFSTEHCGIHKWDTRTNSESWSFTSSPEEG
YISALVVGQCGNWFISGSSRGVLTLWDNRFLLPVNTWHYSTVSPIEKLCLLIPPPSSISS
SGRPLVFVAAGCNEVSLWNAENGSCHQVFRTASTENEDVMPKAPSRPLNKPSTKYVRRSG
NYKYRIDELNDPPVRHPGIRSLLPLPGGDLLTGGTDLKIRYWDQARPEQSFCIAGPLAKE
VRSAKGDILEKAIGNNECYDIRSSFGVQVVQEMYKQTTAVSGLTPKTQLAVAAADSAGCH
RDAILVLASFNLSSQRLISASRDGVVKVWK
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atggggaataagatcgcgcggacgacgcaggcgtcggcgacggagtactacctccatgac
ctgccgtccacctacaacctcgtgctcctcgatgtcgtcactcgcggccgctgcctcaag
tccatccgctgcaagcacgatgagggcttgctcctcgtcaaggtctacttcaagcgcgcc
ggcgagcccatcgacctcagggagcacgagcggaggctagagcggattaggaacgcgctc
aaggggatcgagggctcccacgtatggcccttccaggtttggctacaaacagataaggca
gcatatctcctgagacagtacttcttcaacaacctgcatgatcgactgagtacacgccct
ttcctcagtcagattgcgaagaaatggcttgcttttcagttaatccatgcagtggagcag
agccatagtaagggagtttgccatggtgacataaaatgtgagaatgtgcttgttacttct
tggaattggctatatcttgcggactttgcatctttcaagccaacttacatcccacttgat
gatccatctgattattcattctacttcgacactggaggaaggcgaagatgctatctagca
cctgaaagattctatgaacatggtggggagtcccaagttgcagtagatgcacctctgcaa
ccatctatggatatattttcgctcgggtgcgttattgctgagcttttcctgggtggccag
ccactttttgagtatgcacaacttctgtcttatcggcgtggtcagcatgaccccatgatt
gctctagaaaagatacaagattctggtattcgtgacatgatacttcacatgatccagttg
gatcccaaaaaaaggctaccttgtcgaagctatctgcaaaagtatgaatctgttgtgttc
ccattttatttttcgaactttctgcacaagttctttgcagatattgttccaattgactca
gatgccagggttgagaagactcaagaaaattttgagaagatacttgaaataatgatgggc
agctcaacaattgaacaaattgagagatctacattgtctcagcatagtgaaccatctgag
agaaaaggtacgggaaggcgaattttaaactcaccaggagattctaaaaaaaacacatct
gtagttaagaaacatactccggtagaccatcaacatattgctggagatatcaatttcctc
ctcaaagaagtggagaacaggagcaacagcacaagcacaaaggtcacaaaagacatggac
catattaggccctcacagctggttaatccagcaggaagcagaactggaagtggtttgatg
gcccagaacaatgttgtatcccatgtgcagaagatctcaaagagtaatttatgctccttg
gtggctggttatgatggtcaatcagatacctatagctttgacatttttcaacagacagac
tccaaggtgagctgtgaaggcatggtcttacttgcctcattactctgctcgtgcatacgc
agtgtgaaaaaacctgagctaagaagggccagtctcattcttctgaagttttcgtccaca
tacgttgatgatgacagtcgcttacagctagtggttccctatgtgattgcgatgctttcg
gatccagctgccattgtccgctgcgctgctttggaaaccttatgtgacgttctttgtctt
gtgcaagacttccctatcagtgatgctgttatattccctgagtacatcctcccaatgctc
tctttgctccctgatgatacagaggagagtgttagagtgtgctatgctagcaatattcat
aagctggctttaacagcttataggttcctacttcgttctcgtagcatagctgatattgga
cctctggatgaatcagtggaagctcccagatcacagtctgcaagttcaccagtgaagaag
caagataaaatttatggccagcttgcagaactgaggaaaaatatttatgaaatagtacaa
gatttggcaatgggtcaaaagcagacacctaacgtccgcagagctcttctgcaggatata
ggttatttgtgttacttctttgggcacaagcaaagtaacgactttcttcttcctatactt
ccagcatttctgaatgaccatgatgagcagctccgtgcagttttctttggccaaattgtc
tttgtttgctatttcattggttcaaggagtgttgaggaatatcttttgccatatcttgaa
caggcactaagtgatggtatggaggctgtccttgtaaacgcacttgattgcttgtccatg
atgtgcaaaagtggttatttgaggaaaagagtaattgttggtctattgggaaaggctctc
ccgctgcttcggtatccaatcaattgggttaaacagtctgctttaagatttgttgctgct
tgcagtgagagtttaggggctgttgatacttatgtgtaccttactcctcatctaaggcag
ttcctacacagggagccaccttcattgtcctctgaaactgctcttctttcatgccttaag
cctcctctgcccaaatcaatcttctacgaagctttagaggatgctcaggacatgggcgac
attttactgaagggcggtggcaagaaagaactgatagtacatggtggaaaataccctggt
aaagtacaaagtggatcctcgataaattttgaagatgttgcacggttgaaaggccctaat
attttgagcaatatatctttggatgtcaaagattcagtttctcctgacaaatcgttatat
tctggttttgcattacatgcatctgctgggaatagctccttttatgatggcttatctaaa
ggaataccatcatattctgtttgtactgataagcgaggtttaggagaaacacatgtggtc
cctgattcttcggtgtataaagcatcaataaggctaccgtggttggaacccaaccgccca
ggcgtgcagactagagatgattatttcagtagcaagcgtcgagatttaagcatcaatgat
tctatgaagagcagttcatctttgcaaggggatagcatgccaaactctgatattggagga
ttgccatccttctccagatcagcaatgaacctggaggctggatggaagccccgtggaatt
ctagtggcacatctccaggagcatcgctcgtctgtcaatgatatcgccgtgtcaaacgat
aataccttttttgtgactgcgtctgatgactcaagtatcaagatatgggatacaagaagg
ttggaaaaggacattgccttcagatctaggttaacgtacagcatgggtactagtcaagct
ctatgtacgacaatggttcgcggtacttcacagattgttgtcggtggaagtgatggaaca
ctgcacttgttttctgttgattgtgcacgcggtgttgggagtgttgtggaaaggtattct
ggcattgttgatgtaaaaaggaatgatattaaagaaggctcaattctcagtgttgtgaat
tgttcaagtgacagctttagcccaactgtccttttcagcactgagcattgtggcatccat
aaatgggatacaaggaccaactcagaatcctggtcatttacatcatcacctgaggagggc
tatatatcggcccttgttgttggccagtgtggaaattggttcatctcaggttcttcaaga
ggtgtccttacattgtgggataataggtttttgctgcctgttaacacgtggcactattca
acagtaagccctatagagaaattgtgcttgcttatacctccaccaagctcaatatcttct
tctggaaggccattggtctttgttgccgccggctgcaacgaagtttccctatggaatgct
gaaaatggaagctgccaccaggtgtttagaacggcaagcaccgagaatgaagatgtgatg
ccgaaggcaccatcaagacctcttaacaagccaagcaccaaatatgtaagacgatcaggc
aattataagtacagaatcgacgaattgaatgacccacctgtacgccatccgggcattcgc
tctttgcttcccttacctggcggtgatctattgactggaggaacagacttgaaaattcgt
tactgggatcaagccagacctgagcaaagcttttgtattgctggtcccttggccaaagaa
gtccgttcggcaaaaggagatattttggagaaagcaattggaaacaatgagtgttatgat
ataagatccagttttggagtacaagtcgtgcaggaaatgtataaacagactaccgctgtg
tccggtttgacacccaagacacagcttgcagtggccgctgcagactctgctgggtgccac
cgagacgcaatactcgtgctggcatccttcaatctgtcgagccagaggttgatatcagcc
agcagagatggagtcgtcaaagtatggaaatag
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integrated database retrieval system
