Panicum virgatum (switchgrass): 120657531
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Entry
120657531 CDS
T07260
Name
(RefSeq) AP-1 complex subunit gamma-2-like isoform X1
KO
K12391
AP-1 complex subunit gamma-1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120657531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120657531
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Others
AP-1 complex
120657531
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Alpha_adaptinC2
INTS1_R4
Cnd1
Motif
Other DBs
NCBI-GeneID:
120657531
NCBI-ProteinID:
XP_039791787
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Position
1N:complement(65089705..65100157)
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AA seq
898 aa
AA seq
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MDTVEKIVEDFASDIAMSSFSGTRLRDMIRAIRACKTAAEERAVVRCECAAIRTAISENE
PALRHRNMAKLMFIHMLGYPTHFAQMECLKLIAAAGYPEKRVGYLGLMLLLDERQEVLML
VTNSLKQDLNHPNQFIVGLALCALGNICSAEMARDLSPEVERLMRSREVNTKKKAALCSI
RIVRKVPDLAENFMALAASLLKEKHHGVLISAIQLCTELCKASKDALEYLRKNCIEGLVR
ILRDVSNSSYAPEYDVSGIADPFLHIRVLKLMRILGQGDANCSEYMNDILAQVATKTESN
KNAGNAILYECVQTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMRAIAVDAL
AVQRHRTTILECVKDADASIRKRALELVFLLVNDTNVKPLTKELIDYLSIADPDFKGDLT
SKICSIVEKFSQEKLWYLDQMFKVLSLAGNHVKDDVCHALIVVLSNASELQGYSVRSLYK
ALQAYGKQGSLVRVAVWCIGEYGEMLVNNVGMLDGEEKITVTESDAVDAVEIALNRHSAD
ATTGAMCLVALLKLSSRFPSTSERVKQIVARNKENVVLELQQRSIEFSSIIQRHQSIRSS
LLERMPVLDEASYLVKRATATQATISANKLAPTVAPGGLKLPNGVAKPTSAPLADLLDLS
SDGAPASTTTSTTPNDFLQDLLGIGGVSTSTAGVPSTASTDILMDLLSIGSSPSQNGTPG
QAESKPVHAVPEAIDLLGSLSSTTSVSAEIKPTHSVSQDMDLLDGLSSSTSFSGPEKTVH
PSITAFQSTTLKITFDFKRQPGNARETTIHATFTNLTSCTYTDFIFQAAVPKFIQLKLDP
ASGNTVPANGNGSVTQGLNVTNNQQGQKPLAMRIRMSYKVNGEDRLEQGQVNNFPSGL
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggatacggtcgagaagatcgtcgaggactttgcctcggacatcgctatgagttccttc
tccggcacacgcctccgggatatgatacgcgcgatacgcgcgtgcaagacggcggcggag
gagcgggcggtggtgcggtgtgagtgcgcggcgatacgcacggctatcagcgagaatgag
ccggcgctccggcacaggaacatggccaagctcatgttcatccacatgctcggctacccc
acccatttcgcccagatggagtgcctcaagctcatcgcggccgcggggtacccggagaag
cgggtgggctacctcggcctcatgctgctcctcgacgagcggcaggaggtgcttatgctc
gtcaccaactccctcaaacaagatctcaaccacccgaaccagttcatcgtgggcctcgca
ttgtgtgcgcttggtaacatctgctctgccgaaatggcacgggatctgtcgccagaagtg
gagagattgatgcgcagtagggaagtcaatacaaagaaaaaggctgctttgtgctctata
aggatcgtacgaaaagtgccagatttggcggagaacttcatggccctggctgcatcactg
ttgaaagaaaaacaccatggggttcttatatctgcaattcagctctgcacggaactatgc
aaagccagcaaagacgctctggagtacctgaggaagaactgcattgaaggtctggttcgc
atactgagagatgtgtccaatagttcttatgctcctgagtatgatgtttctggaattgct
gatccattcttgcatattcgagttcttaaacttatgcgcatcttgggtcaaggcgatgca
aattgcagtgaatatatgaatgatattcttgctcaggttgcaacaaaaactgagtcaaac
aagaatgctggaaatgccattctgtatgaatgtgttcagacaataatgggcattgaagct
actagtggtttacgtgttctggcaattaatattttgggtagattcttgtcaaaccgtgat
aacaatataagatatgttgctcttaacatgcttatgagggccattgcagttgatgcactg
gcagtgcagaggcacaggacaacaatattagagtgtgtaaaggatgccgatgcctccatt
cgcaaaagggcccttgaacttgtttttctgttagtcaatgacacaaatgtaaagcctttg
actaaagagctcattgattacttaagcattgcggatccagactttaaaggagatctcaca
tcaaagatatgctcaatagttgaaaagttttctcaagagaagttatggtaccttgatcag
atgttcaaggttttatctctggctggaaatcatgtgaaggatgatgtatgccatgccctt
attgttgtgttaagcaatgcatcagaacttcaaggatattcagtgaggtcattgtataag
gccttgcaagcatatggcaaacagggaagtttagtgagagtagccgtttggtgcattggt
gaatatggtgaaatgctggtgaacaatgttggcatgttggatggggaggaaaaaattacg
gtaacagaatctgatgctgtggatgctgtagaaatcgctcttaaccgccactctgcagat
gcgacaactggagctatgtgtctggttgctcttttgaagctctcctcacgatttccatcg
acctcagagagggtgaaacaaatagttgctcggaataaggagaatgttgtgcttgaacta
cagcaaagatcaatcgaattcagttccataatacaaagacatcagtctatcagatcgtct
ttgcttgaacgtatgcctgtattggatgaagctagttatctggtgaagcgggctactgct
acacaagcaactatttcagcaaataaacttgccccgacagttgctcctggaggccttaag
cttccgaatggtgtagcaaaacccacctcagctcctttagctgatttgcttgatttgagt
tctgatggtgcaccagcttcaaccaccacttctacaacacctaatgattttctgcaagat
cttctcggtattggtggagtaagtacatcaacagcaggtgtaccttcaactgctagcaca
gatattcttatggaccttctatccattggatcatccccatcacagaatggcacgcctgga
caagcggagtctaaacctgttcatgctgtacctgaagctatcgatctgctcggtagtttg
tcatcaactacatctgtttctgcagagattaaacccacacattcggtatctcaagacatg
gatctgctcgatggtttgtcatcaagtacatctttttctggaccagaaaaaacagttcac
ccatcaataacagctttccagagtacaaccttgaagatcacctttgatttcaaaaggcag
cctggaaacgcgcgagagacgacaattcatgccacttttacaaatttgacatcgtgtacc
tatacagattttatttttcaggccgctgttccaaagttcatccagttgaaactggatcca
gctagtggcaacactgttccagctaatggaaatggttcagttactcaagggctcaatgtc
accaataaccaacagggccagaaaccacttgcaatgcgtatccggatgtcttataaggtg
aatggcgaggacagattggaacagggccaagtcaacaattttccttctgggctatag
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