Panicum virgatum (switchgrass): 120657706
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Entry
120657706 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120657706
KO
K19022
AP-5 complex subunit beta-1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120657706
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
120657706
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_C
Motif
Other DBs
NCBI-GeneID:
120657706
NCBI-ProteinID:
XP_039792051
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Position
1N:66481806..66486511
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AA seq
1130 aa
AA seq
DB search
MWQFGLRFGFGPKERREAQSISLTQPTNRIASGGSKGTSPAMDRQLSPQEWEQLLDDFSS
SPSRRHRWLHLPLLDLAVSSLPRRDLPSHLKPLLLSLIDDHLLPPSPRSLPLLLTSFLSF
PPDHPLRDHLLVTVVSAFASALAAPLSKDHHAPPLAALVDALLAAANRPNHAPDRALACD
ALRALDAALPGLLADALGHLYALAAADRSPAAQSYLLLLASAARHAVRLGRLGATTSILA
LAGPPTPFSVPAHLLSPPAASMAVPPPSEVNVRDIRKVLALLMDRPQVLTPAAATEMTAI
LAEIASAVLRWAPAIAAHIKVHFGGMLYSSNPMLLHSLLTLFLQFPDAFGAEDERTMARR
LALAAREAHRPLAARLLALHWLLGSTMFRNLVPGLARWFYPNLFDPLALKAKKLDCLAYV
AAQLDGDKVAGGRASEQATGLLDDGLVCVSAFRWLPAWSTETGVAFRALHRVLIIAAPHS
TEDTRCSGAGELLNSTVFHHLQAILVDMASEHRGLVPVIAEFTNRLLACNSHQWAGEQLL
RTLDECLLPRLEPGYQLASYHPLFEEIAQNEMVPQLRLIELLTKQMVSLTKKHGPDTELR
SWSHGSKVVGICRVMLKHHHSSHIFLPLSHLLVLTIESFPDLEVRDHARICLRMLSCVPG
NKLRHLMGVGEQPSGVTPSHPGSLFDIPSPRPAQYLTSMADLVSYIHLERIVPLVVKQSW
ALTLPNFSVHSRPSGHILSIQDVSSSPSEQEKPAGPTIERIGYTQETLRVMDSKGAETLK
ILRRYFACIPEYLHSSGLKIRIPCTFRFDSEPFNHAWRSDSPVSGSDEADELPALYAVMI
TFSSSAQFGKIPSCHVPFILGEPPGSGMDIVPINNQKREESSYCASVVIELEPREPSPGL
IDISIAANTENCQVLSGSLKPVTVGIEDMFMMASIPPDTPKESVAVYYQDLFHALWEACD
SSSNTGRETFPLSGGKGSAAINGTRSVKLMEVTPKVLIGAVERYLASFVVSVAGDSLVTI
LRGNGIIKNIVWEEGVSVAGVGADALVPYSPDSNIQLQLIDDDDIGVGSERYGHESKRDM
GVIRAMIFLPPRYHLLFLMEVGCASTLVRIRTDHWPCLAYVDEYLEALIS
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaatttgggcttcggtttgggtttgggcccaaagaaagaagagaagcccaatca
atctctctaacccaaccaaccaaccgcatcgcatctgggggaagcaagggaacgtcgccg
gcgatggaccgccagctctcgccgcaggagtgggagcagctcctcgacgacttctcctcc
tccccctcccgccgccaccgatggctccacctcccgctcctcgacctcgccgtctcctcg
ctcccccgccgcgacctcccctcccacctcaagcccctcctcctctccctcatcgacgac
cacctgctcccgccctccccccgcagcctccccctcctcctcacctccttcctctccttc
cctcccgaccaccctctccgcgaccacctcctcgtcaccgtcgtctccgccttcgcctcc
gccctcgccgcgcccctctccaaggaccaccacgcaccgcccctcgccgctctcgtcgac
gcgctgctcgccgccgccaaccgccccaaccacgcccccgaccgcgcgctcgcctgcgac
gccctgcgcgccctcgacgccgcgctcccgggcctcctcgccgacgccctcggccacctc
tacgcgctcgccgccgcggaccgctccccggcagcccagtcctacctcctcctgctcgcc
tccgccgcgcgccacgccgtacgcctcgggaggctcggcgccaccacctccatcctggcg
ctcgccggtccgcccacccccttctccgtgcccgcccacctgctctcgcctcccgccgcc
tctatggcggtgccgccgccctccgaggtcaacgtacgggacataaggaaggtgctcgct
ctgctcatggacaggccgcaggtgctcacgcccgcagccgccacggagatgacggccatc
cttgctgagatcgcatcggctgtgctcaggtgggcgccggccatcgcagcgcacataaag
gtgcacttcgggggaatgctctactcctccaaccccatgctgctgcactcgctgctcaca
ctctttctccagttcccggatgcctttggggctgaggatgagcgcacaatggcacgccgc
ctagctttggctgctcgtgaggcgcaccgcccactcgcagcacgattgctggccttgcat
tggctactcggttctaccatgttcaggaatcttgtgcctgggcttgcccggtggttttac
cctaacttattcgatccccttgcgctcaaggccaagaagctggattgtctcgcttatgtt
gctgctcaacttgatggggataaggttgcaggaggcagagctagtgagcaagcgactggg
ctccttgatgatggcttggtttgcgtctccgccttcaggtggctccctgcatggagtact
gaaacgggtgtggcgttccgagcactgcacagggtcttgattattgctgctcctcacagc
accgaggacacgcgctgctccggggctggtgagctcctgaattctactgtcttccaccat
ttacaggctatcttggttgatatggcatcagagcatcggggtttagtcccagtgattgct
gagttcaccaaccgtctgctagcatgcaactcacatcagtgggctggggagcagttgctc
cggacacttgatgagtgcctacttccaaggcttgagccaggctaccagcttgcgtcatac
caccctctttttgaggaaattgcgcagaatgagatggtgcctcagctccgcctaatagaa
ttgctaaccaaacagatggtttctctcaccaagaagcatggcccagacacagaactaagg
tcgtggtctcatggaagcaaggttgtgggcatttgccgtgtcatgctgaagcatcaccac
agctctcatatttttcttcccctttcgcatcttcttgtgctcactattgagtccttccct
gatctggaggtccgggaccatgcaaggatttgtttgcggatgttatcttgtgttcctggg
aataaactgaggcatctcatgggagttggcgagcaaccttctggtgtcactccttctcat
ccaggttccttgttcgacatcccatcaccacgccctgctcaatatcttacgagcatggcc
gatctggtgtcttacattcatcttgaaaggattgtgcctctagttgtaaagcaatcgtgg
gccctcacattgcctaatttcagtgtccacagcagaccatctggtcacattcttagtata
caggacgtgagctctagtccctcagagcaagaaaagccagcaggaccgacaatcgagaga
attggatatacacaagaaacacttcgtgtgatggattctaaaggtgcggaaacattgaaa
attctcagaaggtactttgcgtgcattcctgagtacctgcactcatctggtctcaagata
agaataccctgcacgtttagatttgactcagagccatttaaccatgcgtggagatcagat
tcaccagtttcaggttctgatgaggctgatgagttgccagccctttatgcagtaatgatc
acattttcgtcaagtgcacagtttggaaaaatcccctcatgccatgtacctttcattcta
ggggaacctccaggttctggtatggacattgtccccataaataatcagaaaagggaagaa
tccagttactgcgcttcagtggtgatagaactggaacctcgagagccttcacctggcctt
attgatatctcaattgcagcaaatacagagaactgccaagtcttatcagggtcccttaaa
cctgttacagttggcattgaggacatgtttatgatggccagcataccacctgatactccg
aaagagagtgtggctgtgtattaccaggatctgtttcatgctttatgggaggcctgcgat
agttcttctaacacaggtcgagagactttccctttgagtggagggaaaggatcagctgcc
attaacggaactcggtctgttaagcttatggaggtaactccgaaggttttgattggagct
gttgaaagatatctcgcttcctttgttgtcagtgttgctggagattcacttgtaaccatt
ctgagaggaaatggaatcattaagaacattgtgtgggaagaaggtgtctcagttgccggt
gtaggtgctgatgcactggttccatactcaccggacagcaatatccagcttcagctcata
gatgacgacgatattggggttggttctgagaggtatggccatgaaagcaagagggatatg
ggagtcatacgggccatgatattcctaccacccaggtatcacctcctcttcttgatggaa
gttggatgtgcctccacattggttaggataaggaccgatcattggccttgccttgcatat
gtggatgaatacctggaagcgttgatttcatag
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