KEGG   Panicum virgatum (switchgrass): 120657998
Entry
120657998         CDS       T07260                                 
Name
(RefSeq) protein CIA1-like
  KO
K24730  cytosolic iron-sulfur protein assembly protein CIAO1
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120657998
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120657998
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    120657998
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     120657998
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_ELP1_1st eIF2A Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 120657998
NCBI-ProteinID: XP_039792129
LinkDB
Position
2N:10234619..10239481
AA seq 351 aa
MDGAAAAAATELREAHRLAGHTDRVWALAWNPAGAVPVLASCSGDKTVRIWKRAPDGAWR
CTDVLEDTHNRTVRSCAWSPDGRLLATASFDATTAVWEYNGADFECVATLEGHENEVKSV
SWSPSGSLLATCSRDKAAWIWEVQPGNEYECVSVLQGHTQDVKMVQWHPLLDILVSVSYD
NTIRVWVDDGDDEWHCVQTLTEANNCGHSSTVWAVSFNQKGDRMVTCSDDRTLKIWDTSA
DLSQPKTGEGHESWRHLSTLTGYHDRTIFSVHWSSEDVIASGAGDDAICLFAEENSSMVE
GPSYKLILKKEKAHDMDINCVRWCPQDPRLSASASDDGTVKLWELRGSVLD
NT seq 1056 nt   +upstreamnt  +downstreamnt
atggacggcgccgcggcggcggcggccacggagctgcgcgaggcccaccgcctggcgggc
cacaccgaccgcgtgtgggcgctcgcctggaaccccgccggcgccgtccccgtcctcgcc
tcctgcagcggcgacaagaccgtccggatctggaagcgcgcccccgacggcgcctggcgc
tgcacggacgtgctggaggacacacacaaccgcacggtgaggtcctgcgcctggtccccc
gacgggaggctgctggccaccgcgagcttcgacgccaccaccgccgtgtgggagtacaac
ggcgccgacttcgagtgcgtcgccactctggaggggcacgagaacgaggtgaagagcgtg
tcttggagcccttccgggtcgctgcttgcgacgtgcagccgggacaaggcagcgtggata
tgggaggtgcagccggggaatgagtacgagtgtgtgtcggtgctgcaggggcacacacag
gatgtcaagatggtgcagtggcaccctttgctcgatattctggtctctgtcagctatgat
aatacaatcagggtctgggttgatgatggggacgatgagtggcactgtgtacagacatta
accgaagccaataactgtggtcattcatcaacagtatgggcagtatcatttaaccagaaa
ggtgataggatggtcacatgcagtgatgaccgcacactaaaaatatgggacaccagtgct
gatttgtctcaaccaaaaactggtgaaggtcatgaatcttggcgacacctttctactctc
acaggatatcacgatcgaacaattttttcagtccattggtcaagtgaggatgttatagct
agtggtgctggtgacgatgcaatctgcttatttgctgaggagaatagtagtatggttgag
gggccttcgtacaaactaatactgaagaaagagaaggcccacgacatggatataaactgt
gtccgatggtgtcctcaggacccgaggttatcggcatctgcaagcgacgatggcacagtg
aaattgtgggagctgagggggagtgtactggattga

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