Panicum virgatum (switchgrass): 120658168
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Entry
120658168 CDS
T07260
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease 2-like
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120658168
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
120658168
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
120658168
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-GeneID:
120658168
NCBI-ProteinID:
XP_039792342
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Position
2N:complement(55008474..55013259)
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AA seq
611 aa
AA seq
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MVKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSADVIMAEGYEAFV
SCNRSAKGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQDYAKNSEIVGDFVIAT
PVAEEGLGEITREDLLRVDNEGRCIITDHGHFVLFNIYGPAVEEGDKERVHFKLLFYKIL
QKRWEHLLALGKRVFVVGDLNIAPASIDRCDAPPGFEKQMFREWLRSMLREHGGPFFDAF
RSKHPEREGAYTCFNQKIGAEEYNYGSRIDHILISGACLHHCDSAEDNSIICCHVEECEI
MNHFKRGNSENFSKWKGGRSSKLEGSDHIPVYILLKKIPELPAHNIPPTAARYLPEVRGR
QQSIVSFFNKGKTYELQDAGCLVLSEDTVNDSYCSDDLENKTIAKDGLAAAKGGNLPSLM
CKGGGLDQWRNEGLSGISRNSQKKSPSGTKGVPNKKIKCNLSSQPTIKSFFQPPKSETVN
VSTSTLVTPVETIHCMNQICVPNDDSLPESMQCTTSGAEDQDKTNVSSCSLSTDKCNAAA
LEWQRIQQKMKMTLPRCKGHREPCISRSVKKGPNVGRLFYVCPRAQGPASNPEANCGHFQ
WAPVKSKGKRS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagatagtgacgtacaacgtgaacgggctgcggccgcgggtggcgcagcacggc
tccctccgccgcctcctcgacgccctcgacgccgacatcatctgcttccaggagaccaaa
ttgtcaagacaggacctgtcagcagatgttataatggctgaaggatacgaggcttttgtt
tcatgcaatcgctctgctaaagggcgtggagcatactctggtgttgcaacattttgccga
gtaacatctgcattttccagccaggaggttgctttgccagtagcagcagaagaaggattt
actggacttcaggactatgcaaaaaacagcgaaattgttggggattttgttattgcaact
cctgtagcggaggagggccttggtgaaatcacaagagaggaccttctaagggtggacaat
gaggggcggtgcatcatcaccgatcatggacattttgttcttttcaacatatatggccca
gctgttgaagaaggtgataaagagcgggttcattttaagctactattttataagatactg
cagaaacgatgggaacatctattggctcttggaaagagagtatttgttgttggtgatttg
aatattgctcctgcttcaatagataggtgtgatgcgcctcctggttttgagaaacaaatg
ttccgagaatggctgagatccatgctgagagaacatggaggtcccttttttgatgctttt
cgatccaaacaccctgaaagggaaggagcatatacttgttttaatcaaaaaattggtgct
gaagaatataattacggttctagaatagaccacattctcatttccggtgcctgtctccat
cattgcgattctgcggaggataatagcattatctgttgccatgtagaagaatgtgagata
atgaatcatttcaaaagagggaattctgaaaatttttcaaagtggaaagggggaagaagt
agtaagctagaaggatctgatcatattccagtttatattttgctgaaaaaaattcctgaa
cttccagctcataatatcccaccaacagctgcaagatatcttccagaggttcgtggacgg
caacagagtattgtgtcattcttcaataaagggaaaacttatgagctgcaggatgctggt
tgtttggttctgtcagaggatacagtaaatgatagctattgtagtgatgacttggaaaat
aaaactatagctaaggacggactggcagctgcaaaaggtggtaaccttcctagtttgatg
tgtaaggggggaggtcttgatcaatggagaaatgaaggtttgagtggcatctcccgtaac
agccagaaaaaatcaccatctggcaccaagggtgtgccaaacaagaagattaaatgcaac
ttatcctctcaaccaacaatcaagtcattttttcaaccaccaaagtcggagacagtaaat
gtcagtaccagcaccttagttactccagtggaaacaatacattgtatgaatcaaatatgt
gttccaaatgatgatagtctgccagaaagcatgcagtgcacaacttcaggcgccgaagat
caggataaaacaaatgtatcatcctgttcactttcaacagacaagtgtaatgctgcagca
ttagagtggcaaagaatacagcaaaagatgaagatgacactgccacgatgcaaaggccat
cgtgaaccatgtatttcaaggtccgtgaagaagggccctaatgttggccgattattctat
gtctgtcctcgtgctcagggacctgcatcaaatccagaagcgaattgcggccactttcag
tgggcacctgtaaaatctaaagggaaacgttcgtga
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