KEGG   Panicum virgatum (switchgrass): 120658189
Entry
120658189         CDS       T07260                                 
Name
(RefSeq) SKP1-like protein 1A
  KO
K03094  S-phase kinase-associated protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120658189
   04120 Ubiquitin mediated proteolysis
    120658189
  09126 Chromosome
   03083 Polycomb repressive complex
    120658189
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120658189
   04121 Ubiquitin system [BR:pvir04121]
    120658189
   03036 Chromosome and associated proteins [BR:pvir03036]
    120658189
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    120658189
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     120658189
   Cul7 complex
     120658189
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120658189
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     120658189
SSDB
Motif
Pfam: Skp1 Skp1_POZ Pollen_allerg_2 UL45 YHR052C-B
Other DBs
NCBI-GeneID: 120658189
NCBI-ProteinID: XP_039792364
LinkDB
Position
2N:complement(55323281..55325123)
AA seq 172 aa
MASDAAAGKDKMLTLISCDKENFEVEESVARESRTILHMIEDGCTDNGIPVPNVNSKILA
KVIEYCKKHVEARRGADADAVEPTAATNKASDDELKTFDADFVKVEQATLFDLILAANYL
DIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
NT seq 519 nt   +upstreamnt  +downstreamnt
atggcgtcggacgcagcggcggggaaggacaagatgctgacgctgatcagctgcgacaag
gagaacttcgaggtggaggagtcggtggcgagggagtcgcggaccatcctgcacatgatc
gaggatggctgcaccgacaacggcatcccggtccccaacgtcaactccaagatcctcgcc
aaggtcatcgagtactgcaagaagcacgtcgaggcgcgccgcggcgccgacgcggacgcc
gttgagccaactgccgcgaccaacaaggcctccgacgacgagctcaagaccttcgatgct
gacttcgtcaaggtggaacaggccaccctcttcgacctcatcctggctgcaaactacctg
gacatcaaggggctcctggatctgacctgccagaccgttgcggatatgatcaaggggaag
actccggaggagatccgcaagaccttcaacatcaagaacgacttcacccctgaggaagag
gaggaagtgaggagggagaaccagtgggccttcgaatga

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