Panicum virgatum (switchgrass): 120658216
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Entry
120658216 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120658216
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120658216
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120658216
03036 Chromosome and associated proteins [BR:
pvir03036
]
120658216
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120658216
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120658216
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120658216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
Motif
Other DBs
NCBI-GeneID:
120658216
NCBI-ProteinID:
XP_039792390
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All DBs
Position
2N:complement(55609013..55611808)
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AA seq
464 aa
AA seq
DB search
MGAAAAEVVAPRPPSAAGKRRSTTLRFLFELEKPDGLLPGTAKLPPPSPEPAADSLIDKI
ASCHRVFTFAAGAGESDEERDAKRDRLVEVLCEVRSAGGKQRALDHRVMVALLRMVAANL
FRAMPPSAYPPLPPDGVDEDAPAMVLAPSWPHLQVVYDILLSAVTAADAKALRNHVDRAF
LSGLLALFGSEDPRERDRLKTVYHQLYSKLTGERAFMRRSMAAALLRLVYEAPAAERHCG
VAELLEICGSIINGFAVPLKEEHRAFLARVLLPLHRTRWAHTYHRQLAYCVLQFVHKEPG
LAAAVVTGILRHWPVTNCQKEVLLIEELEEILDVIDPDQFQNLAVPVCSRIARCVSSCSS
QVAERALYVWNNERFLELATSSPGVMEKILPAFVASVEDNLERHWSKCVQQVTASIKALL
EQVAPDLYARCAADLAARRSEAEVAAAVRDARWRKLEMAAAGAF
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctgccgcggcggaggtggtggcgccgaggccgccgtcggcggcgggcaaaagg
cggtccaccacgctgaggttcctgttcgagctcgagaagccggacgggctgctgcccggc
acggccaagctcccgccgccgtcgccggagcccgcggccgacagcctgatcgacaagatc
gcctcgtgccaccgcgtgttcacgttcgccgccggcgcgggcgagagcgacgaggagcgg
gacgcgaagcgggaccgcctcgtggaggtgctctgcgaagtccggtctgcgggcggcaag
cagcgggcgctggaccaccgcgtgatggtggcgctgctgaggatggtcgccgccaacctg
ttccgggcaatgccgccgtcggcgtacccgccgctgccgcccgacggcgtggacgaggac
gcgccggcgatggtgctggccccgtcgtggccgcacctccaggtggtgtacgacatcctc
ctctccgcggtcaccgccgcggacgccaaggcgctgcgcaaccacgtggaccgcgccttc
ctctcgggcctcctcgcgctgttcggctccgaggacccccgcgagcgcgaccggctcaag
accgtgtaccaccagctctactccaagctcaccggcgagcgcgccttcatgcggcgctcc
atggccgccgcgctcctgcggctcgtctacgaggcgcccgccgccgagcgccactgcggc
gtcgccgagctgctggagatctgcggcagcatcatcaacggcttcgccgtgccgctcaag
gaggagcaccgggcgttcctggcgcgcgtgctgctgccgctgcaccgcacgcgctgggcg
cacacgtaccaccgccagctcgcctactgcgtgctccagttcgtgcacaaggagccgggg
ctcgccgccgcggtcgtcaccggcatcctgcgccactggcccgtcaccaactgccagaag
gaggtgctgctcatcgaggagctcgaggagattctcgacgtgatcgaccccgaccagttc
cagaacctggccgtgcccgtctgctcgcggatcgcccgctgtgtcagtagctgcagctct
caggtggcggagcgggcgctgtacgtgtggaacaacgagcggttcctggagctggcgacg
tcgtcgccgggcgtgatggagaagatcctgccggcgttcgtggcgagcgtggaggacaac
ctggagcggcactggagcaagtgcgtgcagcaggtgacggccagcatcaaggccctgctg
gagcaggtggcgcccgacctgtacgcccggtgcgccgccgacctcgccgcgcggcggtcc
gaggccgaggtcgccgccgccgtgcgcgacgcccggtggcggaagctcgagatggccgcc
gccggcgccttctaa
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