Panicum virgatum (switchgrass): 120658267
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Entry
120658267 CDS
T07260
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120658267
03460 Fanconi anemia pathway
120658267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120658267
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120658267
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120658267
FA (Fanconi anemia) pathway
Downstream FA components
120658267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Motif
Other DBs
NCBI-GeneID:
120658267
NCBI-ProteinID:
XP_039792436
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All DBs
Position
2N:complement(56241175..56262877)
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AA seq
1315 aa
AA seq
DB search
MGAAAMASPDADDFVSPSASAPPAPRARADGGVYHVAGVPVEFPYKPYGTQLAFMGRVIA
TLDRARRQGQSHALLESPTGTGKSLSLLCSALAWQRHYPLRSPPTAPATPPDPFLHGGGF
VADDTQPQATPVVPVKAAKKKNAPTIYYATRTHAQITQVVREYRKTSYRVRMAILASRKH
YCVNKLACMSDNIDEQCKLLLDDNVQGSSCSEFKNAQKLSRHPSLQIGGCYEVHDIEDLV
RVGRKVKGCPYFAAQHMAEAAQLVFCPYNYLISPVVRRAMDIDISGSVIILDEAHNIEDT
ARDAGSVDVDEESLYLLQAELQNLATDEAVAMIYQPLHDVIQGLIGWISEREDNLQNHEF
GHPALYWTGEKAMKELEWAGITSTHFSVLQECATKAVKAASDTESDGSHLSGGRAMKLES
LFSSLSYFFANNGRNSCDYQLALQRFVKKEGKDEISSKCTMSLWCLNPAVVFREIADLTL
SVILTSGTLSPMGSFASELGVQFEACLEAPHVINVDSQVFAAVLSSGPTRRKLNASYKTA
DNCSFQDELGTSLEEICRIVPGGALVFFPSYKLLDKLQVRWSQTGQWARLNAQKHVFVEP
KGSTEELEPVLKGYYDAILGKAPVKKGRGGAKQIVKNRLTKNSSQESAKAGAALLAVCRG
KVSEGIDFSDDNARVVVIVGIPFPNINDVQVKLKKRYNDSFKSSKCLLSGSEWYCHQAFR
ALNQAAGRCIRHKSDYGGIILIDERYQEDRNLVYISKWLKNAIKKYDSFQDTIDGLQRFF
QNAEEKIKIKDHNMFPKIKLESEALSSLSDKRKLPWPELSLSYHSAPEKNQKVKTECLSQ
KVPYIDEVAADQKKVGTCYTSPEVSKILSRSSLLVKKEISLTPNSPQIAYQLPACKVQSH
SEGVTDTEANYEVKTEVINIEEDDFKYEVKTEVINIEEDDFKSRYKMTILNPLEGRLPQS
TPVEETSPVASPSNYSAVNISVGINNQNLSCLSTSASTPERTTYRDCHDTLINRSVNSHC
EKKRRLRSPMSCCTYSDHSNSASKSHCHTDYAVNILHGELNRNAELYCKNMSMSRCENVE
LERKVTAEEVSEKTPKQKKLLISCIRCKRALGLEQDGFLVTCSQSSSSKFYLAFLLRHGL
STIGFPEDGLPESTPAEIELLECDASSLNQNIFGKFSSQGSCHHSGVWSAKDGCVYKAVA
CPFCFSENACATMILGVQVLATDKPNQQLVQKVLLFSERLDVKPEPSKGQASRIRRDFSN
SISPPPVMDLESFAYKPLKKDPVPLNSRRSKVSYLLPLLLSFAVLLVITFPEFEV
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgccgccatggccagccccgacgccgacgacttcgtctcgccgtcggcatcg
gcgcctcccgccccgcgagcgcgggccgacggaggcgtgtaccatgtggccggcgtgccg
gtggagttcccctacaagccctacgggacacagctggcgttcatggggcgggtcatcgcc
acgctcgaccgcgcgcggcggcaggggcagtcgcacgcgctcctagagtctccaaccggc
accggcaagtcgctctccctcctctgctccgcgctcgcctggcagcggcactacccgctc
cgctccccacccaccgcgcccgccactccccccgacccgttcctccacggcggaggattt
gtcgccgacgatacccagccgcaggcgacgccggtcgtcccggtgaaggcggccaagaaa
aagaacgctccgaccatctattacgcgacgcggacgcacgcgcagataacccaggttgtc
cgggagtaccgcaagacgtcgtaccgagtgcgcatggccatcttggcctcaaggaagcat
tactgcgtaaataagcttgcttgcatgagtgacaacattgatgagcaatgcaagttgctg
ctagacgacaatgttcaaggttcctcatgctcagaattcaagaatgctcaaaaactaagt
cgacatccatcccttcagattggtggctgctatgaagttcatgatattgaggaccttgtc
agggttggacggaaagtgaagggatgcccatactttgctgcacaacacatggcagaagca
gcacagctggttttctgcccatataactacctgattagtccggttgtcaggagggcaatg
gacattgatatcagtggctcagtcattattcttgatgaggcacacaacatagaagataca
gcacgtgatgctggaagtgttgatgtcgatgaagaatcactttacttgttgcaggcagaa
ctacaaaacttggccactgatgaggctgttgcaatgatataccaacccctacatgatgtt
attcagggtcttattggttggatttctgagcgggaggataatctgcagaatcacgagttt
ggacatccagctttatattggactggtgaaaaggctatgaaagaactcgagtgggctggt
attacttcaacacacttctcggtattgcaagaatgtgcaacaaaggcagttaaagctgct
tctgataccgaatcagatggatcacacttaagtggtggtcgtgctatgaaactagagagt
ctattctcttcattgagctatttttttgctaataatgggcgtaattcatgtgattatcaa
cttgctttgcagcgttttgttaaaaaggaaggcaaggatgaaatttcttcaaaatgcaca
atgagtttatggtgtctcaatcctgctgttgtctttcgagaaattgcggatttaacactt
tcagtaattctgacatctggcacactttcaccaatgggttcatttgcatctgaacttggt
gtccagtttgaggcttgcctggaagctcctcatgtaattaatgtcgattctcaggttttt
gcagctgttctatcatctggtccaacaagacgtaaattgaatgctagctataaaactgcg
gacaattgttctttccaggatgaacttggaacttcactagaggaaatatgcagaattgtg
cctggtggtgctctagtgttttttcctagctataagttgttggacaaattacaagtgcgc
tggtctcaaacaggtcaatgggcacggcttaatgctcaaaaacatgtgttcgttgagccc
aagggaagtactgaggaactcgagcctgttttaaaaggatactatgatgctattcttggt
aaagctcctgtcaagaaaggcagaggtggtgcaaaacagatagtgaagaatcgattgaca
aagaattcatcacaggaatctgcaaaagcaggagccgctcttcttgcagtttgtcgcggg
aaggtatctgaagggattgacttctctgatgacaatgctagagttgtggttattgttggc
atcccatttccaaatataaatgatgttcaagtaaagctgaaaaagagatataatgattca
ttcaagtcatcaaaatgtttgttgagtgggagcgaatggtattgccatcaggcatttcgt
gctttgaatcaagctgcaggccgttgcattcgtcataaatctgactatggaggcataatt
ttgattgatgaacgatatcaggaggacagaaatcttgtttacatttccaaatggcttaag
aatgcaatcaagaagtatgatagttttcaggatacaatagatgggttgcaaaggttcttt
caaaatgctgaggaaaaaataaaaatcaaagatcataacatgttccccaagataaagttg
gaatccgaagcactttcatctctcagtgataaaagaaagctgccatggccagaattaagt
ttgtcataccactcagcaccggaaaagaatcagaaggtaaagactgaatgtcttagtcag
aaagttccatacattgatgaagtggcagcagaccaaaaaaaggtgggtacgtgttatacg
tcgccagaagtatcaaaaatcttgtcgagatcttctcttttagtaaagaaagagatctct
ctgactcccaacagtcctcaaatagcataccaactgcctgcctgcaaagttcaatctcat
tccgaaggtgtaactgatactgaggcaaactatgaagtcaaaacagaagttatcaatatt
gaagaggatgattttaaatatgaagtcaaaacagaagttatcaatattgaagaggatgat
tttaaatctcggtataagatgacaatcttaaatccattagaaggcagattgccgcagtct
actccagttgaggaaacttctccagtggctagccccagcaactattctgcagtaaacatc
tcagtggggatcaacaatcaaaatctttcttgtctatccacatcagcatctactcctgaa
agaaccacctacagagactgtcatgatactttgatcaacagaagtgtaaattctcactgc
gagaaaaagagaaggttgagatccccaatgagctgttgcacttactcagatcattctaat
tctgcaagcaaatcacactgccatactgattatgctgttaacatactccatggggagctt
aatagaaatgctgaactgtattgtaagaatatgagcatgtcaagatgtgaaaatgttgag
cttgaaagaaaagtcacggcagaagaggtctcagaaaagacgcctaagcaaaaaaagctt
ctcattagttgcatcagatgcaaaagagctcttggtttagaacaagatgggtttcttgtt
acttgttcacagtcttcatcatcaaaattttacttggcatttcttttgagacatggacta
tcaactattggtttcccagaggatggtttaccagaatcaactccagcagagatagaacta
ttagagtgtgatgcttcttcactcaaccagaatatctttggcaaatttagcagccagggt
tcatgtcatcattctggtgtatggtctgccaaggatggatgcgtgtacaaggcagtagcc
tgtcctttctgcttttctgaaaatgcatgcgccacgatgatcctcggtgtacaagttctt
gcaactgataaaccaaatcaacaattggtgcaaaaggtgctcttgttcagtgagcgtttg
gatgtcaagcctgagccatctaagggacaggcttcaaggatccggagagattttagtaac
tccatctcaccgccaccagtaatggaccttgaatcttttgcatataagccattgaagaag
gatccagtgccgctgaactcaagaaggtccaaggtcagttacttactgccattgctgtta
tcttttgccgttctgctcgtgatcactttcccagaatttgaagtgtaa
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