Panicum virgatum (switchgrass): 120658276
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Entry
120658276 CDS
T07260
Name
(RefSeq) protein argonaute 18-like isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120658276
03036 Chromosome and associated proteins [BR:
pvir03036
]
120658276
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120658276
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120658276
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120658276
microRNA pathway
RISC loading complex
120658276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoN
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
120658276
NCBI-ProteinID:
XP_039792450
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Position
2N:57533498..57539313
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AA seq
952 aa
AA seq
DB search
MPPGNHHGGGRRGGHRRIKASPSCAEKAGDRDDHHDDDRGRADQSQHADPRQTLVASDAE
KAAAAAPLLEEFAALGIQVRRAEPVFPPRPGYGAAGTPCVVRANRFLARFVDEGLHHYDV
NISPDPTPKGEYMEVMSKLVSENQHTELGGRFPAYDGCGSLFTAGALPFDTKVFKVTLSA
CADKRRMRARKYKVVIKHAAAISLLQLRMLLAGYPTDIPAQALQVLDNVLRDVVFNKRDD
MEYIAVGRSFFSQKLGCAKDGTLGVEAWKGLYESIRPMQNGGLSVLVDVSSSVFIEPLLL
IDFVQKTLKIDANRKLTKPDHAKLLKAVRGVRIEVTHRGSERRKYRITGLSMNPTKVLSF
KSPSGATKTVIDYFREKYNLKLKFNFLPCLNVGSEQKPVYLPIEVCKIVPRQRYQKKLDG
SQVSTLRKSTCQFQPEQQSICQVVESKQHNGTKHANEFGIDVDDNLTTINARVLPPPNLK
YHDSGSEKTWSPMNGHWNMKDKKVVNGAKIRNWACVNFCEDLSKNVVEQFCFKLAEISRI
TGVELADLKLPIFTTRPDQVEDDIRICYQEAQKELIDQKIDLLLAILPDNNGSLYGNVYH
RIHSFFTSVTYMSRLMLLLTTGNVKKICETDIGVMSQCCRKSIVFTKYSKILANIAIKIN
AKAGGRNSVFEDAQKSLPVVSNKPTIIFGAHVTHPSVVDHSAPSIASVVASQDWHEVDKY
NGVVRAQGQREEMISGLENMVKELLHAFEKESNRKPQQLIFYRDGVSWSQLKQVFEKEIP
EIEKAWKALYNNEKPQITFIAVQKRHSLMLFPNNNNQYHNANRKNVEPGTVVDSEICHPA
EFDFFLCSYAEVKGPSHPVQYLVLRDDNNFTADELQALTNNLCYTHASFTKAMMIAPPAH
YARKLAQRAHLYLAQDPNAAKVASSCGATAPAGGLKQLPEIKDELKRSMFYC
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgggcaatcaccacggcggagggcgccgcggcggccaccggcggatcaaggcg
agcccgagctgcgctgagaaggcgggggaccgcgacgaccaccacgacgacgaccgcggg
cgcgccgaccagagccagcacgccgatccgcgccaaaccctcgtggcgagcgacgcggag
aaggccgccgcggccgcgccgctgctggaggagttcgctgcgctcggcatccaggtccgc
cgcgccgagcccgtgttcccgccgcggcccgggtacggcgccgcgggcacgccatgcgtc
gttagggccaaccgcttcctcgcccgcttcgtcgacgagggcctgcaccactacgacgtg
aacatttcgccggatccgacgccgaagggcgagtacatggaggtcatgtcgaagctggtg
tccgagaaccagcacaccgagctcggcggccgcttccccgcgtatgacggctgcggctcg
ctcttcaccgcgggcgcgctgccgttcgacaccaaggtgttcaaggtcaccctctctgct
tgcgccgacaaaaggaggatgagggccaggaagtacaaggtggtgatcaaacatgctgcg
gcgatcagcctgctgcagctgaggatgctcttggcgggctaccccacggacatccccgcg
caggcactgcaggtcctcgacaacgtgctgcgcgatgtcgtcttcaacaaacgcgatgac
atggaatacattgcagttggtcgatcgttcttctcgcagaaactaggatgcgccaaggat
ggtaccctgggtgttgaggcatggaaggggctctatgagagcatcaggccgatgcagaac
ggcggcttgtctgtgcttgtagacgtgtcttcatcagtattcattgaacccctgctacta
attgacttcgttcaaaagactctgaagatagatgcgaataggaaattgaccaaaccagat
cacgccaagctcttgaaggctgtcaggggtgtgaggattgaagtcacacacagaggaagt
gaacgccgtaaatacagaattactggcttgtcaatgaacccgactaaagttttgagtttt
aaatcaccgagtggagctacgaagactgtcattgactacttcagagaaaaatacaatctg
aaactgaagttcaattttctcccatgcctcaatgttggaagtgagcagaagccagtctat
cttcctatagaggtttgcaagatagttcccagacagcgttaccagaagaagctggatgga
agtcaggtttctactctaaggaagtcaacctgtcagttccaacctgaacaacaatccatt
tgtcaggttgttgagagcaagcagcacaacggcaccaaacatgcaaatgaatttggcata
gatgttgatgacaatcttactacaattaatgctagagttctgccgcctccaaatcttaag
taccacgattctggatctgagaaaacatggtctccaatgaatggacactggaacatgaaa
gacaagaaagtagtaaatggtgccaagatcagaaactgggcatgcgttaatttttgtgaa
gatttatccaagaatgttgttgagcagttctgctttaagctagctgaaatatctcgtatt
actggagtggagttagccgatttgaagctcccaatattcactacacgtccagatcaagtt
gaagatgatattcgtatatgctatcaggaagcgcagaaagagttgattgatcagaagatt
gacctactgcttgctatactgccagataacaatggcagcttatatggtaatgtttatcat
aggatacatagtttcttcacttctgttacatatatgtcacgcctgatgttacttttaacc
acaggaaatgtcaaaaagatctgtgagacagatattggtgtcatgtcacagtgttgtcga
aagtcaattgtcttcacgaaatatagcaagatattggcaaatattgctattaagatcaat
gccaaggctggaggaaggaactcagtatttgaagatgcacaaaagagtttgcctgttgtt
tcgaacaagccgacgattatattcggtgctcatgttactcatccttcagttgttgatcat
tctgctccttccattgcttctgtcgttgcatcccaagactggcatgaggtggacaagtat
aatggtgttgttcgtgcacaaggtcaacgtgaagagatgatcagtggccttgaaaacatg
gtcaaggagctccttcatgcatttgaaaaggagtccaacaggaagccccagcagctaata
ttctacagggatggtgtaagctggagccagttgaagcaggtttttgaaaaagaaatccca
gagattgaaaaggcttggaaagcgctgtacaataatgagaagccacaaatcaccttcatc
gcagtgcagaagaggcatagcctaatgctgtttcccaacaacaacaatcagtatcataat
gctaataggaaaaatgttgagcctggcacagtggttgatagtgagatctgtcacccagca
gaatttgatttcttcctttgcagctatgctgaggtcaaagggccaagccatcctgtgcag
taccttgtgctgcgagatgacaacaacttcacagcagatgaactgcaggctctcacgaat
aacctgtgctacactcatgcaagcttcactaaggcgatgatgatcgctcctcctgctcac
tacgctcgcaagcttgcacaacgtgcccacttgtaccttgctcaagatcccaacgcagca
aaggtggcgagctcctgcggtgcaactgctcctgctggtggtctaaagcaacttccagag
ataaaggatgagctgaagaggtccatgttctactgttag
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