Panicum virgatum (switchgrass): 120658300
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Entry
120658300 CDS
T07260
Name
(RefSeq) cyclic nucleotide-gated ion channel 17-like isoform X1
KO
K27629
cyclic nucleotide gated channel 17
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
pvir04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120658300
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
120658300
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120658300
Ion channels [BR:
pvir04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120658300
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Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
120658300
NCBI-ProteinID:
XP_039792485
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Position
2N:57006257..57013622
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AA seq
707 aa
AA seq
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MFGSRVQDEVEMQRRPNNRIFPDERQNQSKPLYQAARVDRFGANRLDVKNPEKLKVLNEG
NKPWHQRILDPGSNIVLRWNRVYLMACLFALFIDPFFYYLPLVRKYDNGSSCVAKDQGLS
IGITVVRSLADLFYMLNIAIKFHTAYVDPKSRVLGKGELVVDIKKIRRRYIRTDFFVDVL
AAVPLPQVTVWLIMPAIQRPDDNVRNTTFALIIVIQYVIRMYLIVPLSNQIIKAVGVVAK
SAWGGAAYNLLLYMLASHITGAIYYLLSVERQITCWDQQCLVENTSCSLRFISCENIDSN
GYQEWQNNTQIFNNCDANNNNFNYGMFSSALSKGAVSSPLAEKYFFCLWWGLLQLSSSGN
PLVTSAFIVENTFAIAIGAISLILFAQLIGNMQTYLQSVSKRLEEWRLRQRDMDEWMRHH
QLPAYLQERVRRFVQVKWLATRGVEEESILQALPADIRRDVQRHLCLDLVRRVPFFSEMD
DQLLDAICERLVSFLCPENTYISREGDPVNEMLFIIRGKLESSTTNGGRSNFFNSIILRP
GDFAGEELLTWALLPKTNVHFPLSTRTVRSLTEVEAFALRAEDLKFVANQFRRLHSKKLQ
HTFRFYSHHWRTWAACFIQAAWRQHQRRKLAESLSRWESYSWWSEDHQVANKPRHEGTSS
GGRTIAEDAIAHMHKLASASRRFRAEDTAIRRLQKPDEPDFSADHFD
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggtccagggtacaggatgaggtggagatgcagaggaggcctaacaacaggatc
tttcctgacgagaggcaaaatcaatcgaaaccattatatcaagctgcacgtgtcgacaga
tttggtgcaaatagactagatgtgaaaaatcctgagaagcttaaggtgttaaatgaaggc
aacaaaccatggcaccagcgtattctagatcctggaagtaatattgtactgagatggaac
agggtgtaccttatggcatgtttgtttgctcttttcatcgatccgtttttctattacctt
ccattggttagaaaatatgataatggatcttcatgtgttgccaaggatcagggattgagc
ataggaatcactgtcgtacgatcacttgctgatttgttttacatgttgaacatagctatc
aagtttcacactgcatatgtggatccaaagtcccgggtccttggaaagggagagcttgtt
gtagatattaagaagattcgacgaagatatatcagaactgatttctttgtagacgtactt
gcagctgtgccacttccacaggttactgtgtggttaattatgcctgcgatccaaaggcca
gacgacaacgtacggaacactacatttgctctcataattgtgattcaatatgtcataaga
atgtatctcatcgttcctctaagcaatcagattatcaaagctgttggagtagttgcaaag
tcagcttggggaggtgcagcatacaatcttctgctctacatgcttgcaagccacattact
ggtgcaatatattatcttctctccgttgaacggcagattacatgttgggaccagcagtgc
cttgtggaaaatacatcttgcagccttagatttataagttgtgagaatattgattcgaat
ggttatcaagagtggcaaaataatacacaaatatttaacaactgtgatgccaataataat
aattttaactacggaatgttttctagtgcactgagtaaaggcgctgtctcatctccactt
gctgagaaatacttcttttgtctatggtggggcttgctgcagcttagttcaagtggaaat
cctctagtgacaagtgcctttattgtagagaacacatttgcaatagcaattggtgctatc
agtctcatactctttgctcagttgattggcaatatgcagacatacctgcagtctgtcagt
aaaaggcttgaggagtggagactgaggcaaagggacatggatgagtggatgaggcatcat
caactcccagcttaccttcaagaacgtgtccggcggtttgttcaagttaaatggcttgca
acacgaggagtagaagaggagtccatcttgcaagctttgcctgctgatatacgccgggat
gtgcagcgccatctttgtttggaccttgttcgacgtgtcccttttttctctgagatggat
gaccaacttcttgatgccatctgtgagcggctggtgtcgttcctgtgccccgagaacaca
tatatctctcgtgagggtgatcctgtgaacgagatgcttttcatcattcgtggcaaacta
gagagttcaacaaccaacggtggccgtagcaacttcttcaactccatcatcctgcgccca
ggtgattttgcaggtgaagagctgctgacatgggctctgcttccgaagactaatgtccac
ttcccgctttcgacaaggaccgtacggagcctcacagaggttgaagccttcgccctgcga
gctgaggacctcaaatttgtggcaaaccagttccggaggcttcacagcaagaagctccag
cacacattccggttctattcgcaccactggagaacttgggctgcctgcttcatccaggca
gcctggcggcagcaccagagaagaaagcttgctgagagcctcagccgatgggagtcatac
tcatggtggtcagaggatcaccaagttgccaataaacccagacatgaaggcacctcaagc
ggtggtaggacgattgctgaggatgccattgcccatatgcataagctcgcatctgcttcc
agaaggttccgtgctgaggacacagctattcgcaggctgcagaagcctgatgagcccgac
ttctccgcagaccatttcgattga
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