Panicum virgatum (switchgrass): 120658330
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Entry
120658330 CDS
T07260
Name
(RefSeq) protein indeterminate-domain 5, chloroplastic-like
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120658330
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120658330
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GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-C2H2_6
zf-met
zf-C2H2_jaz
zf-C2H2_4
zf-C2H2_STOP2_C
Motif
Other DBs
NCBI-GeneID:
120658330
NCBI-ProteinID:
XP_039792525
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Position
2N:complement(56594124..56600033)
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AA seq
515 aa
AA seq
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MAAASSAPFFGLGDTQMQPPQGPSLQQNSAAAAPGAAAAPPKKKRNQPGNPNPDAEVIAL
SPRTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPKEARRRVYLCPETTCV
HHDPSRALGDLTGIKKHYCRKHGEKKWKCDKCNKRYAVQSDWKAHSKTCGTREYRCDCGT
LFSRRDSFITHRAFCDALARESAQMPPLGAGLYVGSGSMSLGLSGAAAQMHGFADHAGQS
SSAAAAAAAAQFDHIMPPSSGPSLFRSQVSASSSSFFLGGGAPSPAQDFSDDPQGGQGSS
LLHSKSPFQGLMQLPEQQHQPGSSNANGNLLNLGFFSGNGGGSARGQDARLVIQDQFNGG
GGGGNADHSSVMASMGSHLSCSSFPSSLYNSSPSAGLAQNSATALLMKAAQMGSTSSAQN
GPSALLRAAGFSAASGQGTSRAAGEGTSHEAHFHDLIMNSLAGGSGGGGGFSGGGAGFGA
VDDGKLSTRDFLGVGRGAMAPPGLHIGALDPAQMK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcctcgtccgcgcccttcttcgggctcggcgacacgcagatgcagccgccc
cagggcccctctctgcagcagaactccgcggcggccgcgcccggcgccgccgccgcgccg
ccgaagaagaagaggaaccagcccggcaatccaaaccccgacgcggaggtgatcgcgctg
tcgccgcggacgctgctggcgacgaaccggttcgtgtgcgaggtgtgcaacaaggggttc
cagcgggagcagaacctgcagctccaccggcgcgggcacaacctgccgtggaagctgaag
cagaagaaccccaaggaggcccggcggcgggtgtacctgtgcccggagacgacgtgcgtg
caccacgacccgtcccgggcgctgggcgacctcaccgggatcaagaagcactactgccgc
aagcacggcgagaagaagtggaagtgcgacaagtgcaacaagcgctacgccgtgcagtcc
gactggaaggcgcactcgaagacctgcggcacccgcgagtaccgctgcgactgcggcacg
ctcttctccaggagggacagcttcatcacccaccgtgctttctgcgacgcgctggctcgt
gagagcgcgcagatgccgccattgggcgccggcctctacgtcggctccggcagcatgagc
ctcgggctctccggcgccgccgcccagatgcatggcttcgcggaccatgccggccagtcc
tcttcagcagcagcagcagcagcagccgctcaattcgaccacatcatgccaccgtcctcg
ggcccctctttgttccgttctcaggtgtcggcctcctcgtcgtctttcttcctcggcggc
ggcgctccatctcccgctcaggacttctccgatgacccccagggcggtcagggctcgtct
ctgcttcacagcaagtcgcccttccaaggcctgatgcaactccccgagcagcagcaccag
ccgggcagcagcaacgccaacggcaacctcctgaacctcgggttcttctctggcaacggc
ggcggctcggcccgcggccaggacgcgcgccttgtcatccaagaccaattcaacggcggc
ggcggcggcggcaacgccgatcacagcagcgtgatggcgtccatgggaagccacctcagc
tgcagcagcttcccctcttcgctgtacaactcatctccatcggccggcctggcgcagaac
tcggcgacggcgctcctgatgaaggcagcccagatgggctcgacgtcgagcgcgcagaac
ggccccagcgcgctgctccgcgccgccggcttcagcgccgccagcggccagggcactagc
agggccgcaggagaagggacgtcgcacgaggcgcacttccatgacctcatcatgaactct
ctagcgggaggcagcggcggcgggggcggcttctccggcggcggcgcagggttcggcgcc
gtggacgacggcaagctgagcacgagggacttcctcggcgtcggcaggggcgcgatggcg
ccgcccgggctccatatcggcgcactggacccggcccagatgaagtga
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