Panicum virgatum (switchgrass): 120658348
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Entry
120658348 CDS
T07260
Name
(RefSeq) phytoene synthase 3, chloroplastic-like
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120658348
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120658348
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
120658348
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Squalene/phytoene synthase
120658348
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
120658348
NCBI-ProteinID:
XP_039792544
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All DBs
Position
2N:complement(56466424..56470636)
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AA seq
437 aa
AA seq
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MMPTSRAVVSSPPACPARPRRRQQHGCAPGRAGAARLLARCGHGARGRGAAPAPCSASAR
AAGPGAAIGCLEAEPWGAVAPALALAGLQVAAPAPGDALAVPSEHRVREVVLKQAALAAA
APRTARIEPEPVSGALKAAFDRCGEVCNEYAKTFYLATQLMTPERRRAIWAIYVWCRRTD
ELVDGPNASHISALALDRWESRLEDIFAGRPYDMLDAALSDTVASFPVDIQPFRDMIEGM
RMDLRKSRYRTFDELYLYCYYVAGTVGLMSVPVMGISPDSRAATETVYKGALALGLANQL
TNILRDVGEDARRGRIYLPQDELEMAGLSEADIFNGRVTDEWRSFMGGQITRARSFFRRA
EEGATELNQESRWPVWASLLLYRQILDEIEANDYDNFTKRAYVPKAKKLMALPKAYLRSL
MAPSSLTQSQRHYSSLT
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgatgcccaccagccgcgcggtggtgtcgtcgccgccggcctgccctgctcggccgagg
cggcggcagcagcacgggtgcgcgccgggacgcgcgggcgcggcgaggctcctggcaagg
tgcgggcacggggcgcggggccgcggcgcggcgccggcgccgtgctccgcctccgcgcgc
gccgcgggccccggcgccgccattggctgcctggaggccgagccgtggggcgccgtggcg
cccgcgctggcgctggcgggcctgcaggtggccgcgccggcgcccggggacgcgctcgcc
gtgccgtccgagcatagggtgcgcgaggtcgtgctcaagcaggcggcgctcgcggccgcg
gcgccgcggacggcgcggatcgagccggagcccgtgtccggcgcgctcaaggcggccttc
gaccgatgcggggaggtctgcaacgagtacgccaagacattctacctggcgacgcagctg
atgacgccagagagaaggagggcgatctgggcgatctacgtgtggtgcaggaggacggac
gagctggtggacgggcccaacgcgtcccacatctcggccctggcgctggaccggtgggag
tcgcggctggaggacatcttcgccggccggccctacgacatgctcgacgccgccctctcc
gacaccgtcgccagcttccccgtcgacatccagccgttcagggacatgatcgaggggatg
cgcatggacctgaggaagtcccggtaccggaccttcgacgagctctacctctactgctac
tacgtcgccggcaccgtggggctcatgagcgtcccggtgatgggcatctcgccggactcc
agggcggccaccgagacggtctacaagggggcgctggccctgggcctcgccaaccagctc
accaacatcctcagggacgttggcgaggatgcgaggagaggaaggatctatctcccgcag
gacgagctggagatggcggggctctccgaagccgacatcttcaacggccgcgtcaccgac
gagtggaggagcttcatggggggccagatcacgagggcgaggtcgttcttcaggagagca
gaggaaggcgccaccgagctcaatcaggagagccgatggccggtgtgggcttctctgctt
ctgtaccggcagatcctggacgagatcgaggcgaacgactacgacaacttcaccaagagg
gcctacgtccccaaggcgaagaagctgatggcgctgcccaaggcttacctgagatcactg
atggccccctcttctctgacccagagccagagacactactccagcctaacatag
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