Panicum virgatum (switchgrass): 120658554
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Entry
120658554 CDS
T07260
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1-3-like
KO
K03265
peptide chain release factor subunit 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120658554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120658554
03012 Translation factors [BR:
pvir03012
]
120658554
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120658554
Translation factors [BR:
pvir03012
]
Eukaryotic type
Release factors
120658554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
baeRF_family10
acVLRF1
Ribosomal_L7Ae
Motif
Other DBs
NCBI-GeneID:
120658554
NCBI-ProteinID:
XP_039792749
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Position
2N:complement(64005511..64008952)
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AA seq
437 aa
AA seq
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MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDEYGTASN
IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPIN
VSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVHHKFTVDLPKKHG
RGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQS
DMFDQRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEEISQDTG
KYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNSTTGEVTIKHLNKEQEADQSNFRD
SITNAELEVQEKMSLLEWFANEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDI
RSFDELSDDDGLYEDSD
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagccatgagactgataggaacattgagatttggaagattaagaagctgatc
aaggcattggagtccgctagaggcaatggcacaagcatgatctctcttatcatgcctcca
cgcgatcagattgctcgagtggctaagatgttaggtgatgaatatggtactgcttcaaac
atcaagagtagagtcaatcgtcaatctgtgttggctgctatcacctcagctcaacagagg
ttgaagctctacaacaaagtgcccccgaatggattggttctctacactggaaccattgtt
actgaagatggaaaagaaaagaaagttactattgattttgagcccttcaagcctattaat
gtgtcgctatacctttgtgacaacaagttccacaccgaggctctaaatgagctcttagaa
tccgatgacaagtttgggttcattgtcatggatggtaatggtactcttttcggtacacta
agtggcaatacccgtgaagtgcatcacaagttcactgttgatctcccaaagaagcatggt
agaggaggacagtctgctttgcgttttgctcggcttcggatggagaaacgccacaactat
gtccgcaaaacagctgagcttgctacacagtttttcatcaatccagctactagtcagcct
aatgtttcggggctgattcttgctggttctgctgattttaagacagagctgagccaatct
gacatgtttgatcagcgacttcaagccaagatacttaatgtggttgatgtttcttatggt
ggtgaaaatggtttcaaccaagctattgaactgtcagctgagatcttagcaaatgtgaag
ttcattcaagagaagaagctgattggcaagtactttgaggagatcagtcaggacactggg
aaatatgtctttggtgttgatgacaccctgaaggcacttgaaatgggtgctgtggagacc
ctgatagtgtgggagaatctggatatcaacagatatgtgctcaagaacagcaccactggt
gaagttactataaaacatctgaacaaagagcaggaagctgaccagagcaatttccgtgat
tcaatcaccaatgctgaactggaagttcaggaaaagatgtctctcttggaatggtttgct
aatgaatacaagaagtttggttgctcgcttgagtttgtcaccaacaagtctcaagaggga
tcacagttctgtagaggatttggtggcatcggtggtatgttgcgctaccagctggatatc
cgctcatttgatgagctttctgacgatgatggtttgtacgaagactctgattag
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