Panicum virgatum (switchgrass): 120658564
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Entry
120658564 CDS
T07260
Name
(RefSeq) peroxisome biogenesis factor 10-like
KO
K13346
peroxin-10
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120658564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120658564
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Peripheral membrane proteins
120658564
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Pex2_Pex12
zf-C3HC4_3
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
zf-rbx1
zf-C3HC4_4
RING_XB3-XBAT31
Prok-RING_4
zf-RING_6
zf-RING_10
zf-ANAPC11
zf-Nse
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
120658564
NCBI-ProteinID:
XP_039792763
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Position
2N:65256824..65261246
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AA seq
388 aa
AA seq
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MRAGAPAGDAGPSSRSGAGSGAPARPRRFPGAAQPEIMRAAEKDDSYAAHVTEACRDAFR
HLFGTRVAVAYQNEIKLLGQSLYYLLTTGSGQQTLGEEYCDISQVATLHGLPPTPARRIL
FILYQTTVPYLAERISSRIVARSIALNESQFGDPPENDNSSSGIAQSTTHSDASSTLSVS
ALSRSRGRVHALWQWVLQKWPSMLPFAQDFMQLAIRTNLMFFYFEGLYYHLPKRAAGIRY
VFIGKPMNQRPRYQILGIFLLIQLCILGAERLRRSNISSIASSINQISSGSYASSTGRGI
PVLDEDGHIINDIRGGKAADAASHSEASSGKSKCTLCLSTRQNPTATTCGHVFCWNCIME
WSNEKPECPLCRTPITHSSLICIYHSDF
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcaggcgcccccgccggcgatgcgggccccagctcccgcagcggcgcggggagc
ggagcgcccgcgcggccacggaggtttcctggggcggcgcagccggagatcatgcgggcg
gcggagaaggacgatagctacgcggcccacgtcaccgaggcctgccgcgacgcgtttcga
cacctcttcggtaccagggttgctgttgcttaccagaatgagataaaattgcttggtcag
tccctttattacttgctaacaactggttcaggccagcaaacactcggagaagaatattgt
gatatatctcaggttgcaaccttgcatggacttccacctacacctgctaggcggatcctt
ttcattttgtatcaaactactgtgccctatcttgctgaacgaatcagctccagaattgtt
gcacgtagtattgccctcaatgaatctcagtttggcgatcctcctgaaaatgataattct
agtagtggtattgcgcagtccaccacacatagtgatgcttcgtcaaccttgagtgtttct
gctttgtcaaggtcaagaggccgagttcatgccttgtggcaatgggttcttcagaaatgg
ccttcaatgctgccatttgctcaagattttatgcagttggctatccgaacaaacctaatg
ttcttctattttgaaggactgtattaccatttgccaaagcgagcagctggtattcgttat
gtattcattggcaagccaatgaatcagaggcctaggtatcagatcttgggtatttttctg
ttgattcagttgtgtattcttggtgctgaaagactccggagaagtaatatatcatcaata
gctagttccattaaccaaatatcatctggaagctatgcatcgtctacaggtcgaggcatc
cctgttttagatgaagatgggcatatcattaatgacatccgtggtggtaaagctgcagat
gcggcttctcattcagaggcttccagtggcaagagtaaatgcaccctgtgtctcagtacc
aggcaaaaccctactgccacaacctgtggacatgtcttctgctggaattgcataatggag
tggagcaatgagaaacctgagtgcccactatgcagaactccaattacccattcgagtttg
atctgtatatatcattcagatttctag
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