Panicum virgatum (switchgrass): 120659150
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Entry
120659150 CDS
T07260
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120659150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120659150
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120659150
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
120659150
NCBI-ProteinID:
XP_039793132
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Position
2N:complement(3731785..3749748)
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AA seq
290 aa
AA seq
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MLPGLTELELAHAEAELGFALPPDPRVVLAAGLPSGPGWAHPRGPPIVNSVMGMKRRMFK
DLAPMLWYSFAQIPLYLYPFLNTTSKAKSFEYLRLASLNVIDALVKVDDTETVNFLVTSQ
VIPLCLPIMETDSELPKLVATSIARKIMLDASGLQYICATADRFFEAAMALAAMVSALAE
QPSGRLLKHVVRYYLRLTDNPRARDALQICLPQALKDGTFDHCLQDDPATRCCLQQLLDN
LGAPVGGGAPRPGGGGGAEKMEFMLVGSCSLQRARGTGKWTIDMMGPTWQ
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgggcctcacggagctcgagctggcgcacgcggaggccgagctggggttcgca
cttccgcccgacccccgcgtggtgctcgccgcggggctcccctcggggcccggatgggcg
cacccgcgcgggcctccgattgtcaattcagtaatgggaatgaaaaggcggatgtttaag
gatttggctccaatgctttggtactcctttgctcaaattcctctgtacttgtacccattc
ttgaatactactagcaaggccaaatcttttgagtacttgcgcctcgctagccttaatgtc
atcgacgctctggttaaggtagatgatacagaaactgtcaatttcctggtgacaagtcaa
gtaatccctctgtgcttgccaatcatggagacagacagtgagctcccgaaactcgtggcc
acttccatcgccagaaagatcatgctagacgcgtccgggttgcagtacatctgcgccacc
gcggaccgtttcttcgaggcagccatggctttggcggccatggtgagcgcactggccgag
cagccctccggcaggctgctgaagcatgtcgtccgctactacctgaggctgacggataac
cccagggcccgtgacgcgctgcagatttgccttccccaggctctcaaggatgggacgttc
gaccactgccttcaggacgaccctgccacaaggtgctgtctccaacagctgttggacaat
ctgggtgctcctgtgggcggcggagcacctcgtccaggcggcggaggtggagctgagaaa
atggagttcatgcttgttggttcatgttctttgcagcgtgctcgtggcactggcaagtgg
acgatagacatgatgggacccacgtggcagtga
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