Panicum virgatum (switchgrass): 120659191
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Entry
120659191 CDS
T07260
Name
(RefSeq) U3 small nucleolar RNA-associated protein 6 homolog
KO
K14557
U3 small nucleolar RNA-associated protein 6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120659191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120659191
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120659191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP6_C
U3_assoc_6
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
120659191
NCBI-ProteinID:
XP_039793184
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Position
2N:405628..409324
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AA seq
674 aa
AA seq
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MADAVQYRLERMTDELDDLERRGLFNRAELADVVRRRRDFEFRLRRRSPLRQDFLDYIAY
ELRLDSLRNLRKRAIIRDAPSESDDDHGSADEEGTKKKRKRRNKKWKKSISDVAGVLRIL
DIYRMATVRFKGDLDLWFRYLEFCRGKRHGRMKQVLAQAIRFHPKVPGLWIYAAAWEFDQ
NLNVAAARALMQSGLRSCPQSEDMWIEYLRMELTYLNKLKARKVALGEDVKTLQKSDNDA
GKWKDENKELFMPLNEQDDGPEDSKRAGDALEEKEDMFWRQGLLIIQTIYHGAVEALPSS
LTLRKKFLEILNSVDLTHSDELKIEVLDDVKKDFSHCEDYWDWFARLQLTDLNNPNGLKG
KDALSNKLNKSIQVYDEAVRRLPTSKMYSLYAKFWMDVLYPDREDSIASFQNSEFDASEF
TSSILKVYESAESCGCLTEDLACQYVSFCLKLERLEEAKNLAEKLCNGPLSDAANLWSLR
ASMEINSVATAGSTPFSKKKLSCLFDLFNTVLSKLPVTQTEGLWHMAMKLFSNEKIYFEK
LVKCAMLSLSLAGGNDSGASVASAIIGWYLQRDGMKQARKMYKRLLALPRPSLKLFKYCI
ELETNLASLGDNSALANARKLYDSAIDYYPQEREVWRNYYNLELKVGTSETANAVYRRAR
KVLSDSTALTAPSS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccgtccagtaccgcctcgagcggatgaccgacgagctcgacgacctcgag
cgccggggcctcttcaaccgcgccgagctcgccgacgtcgtccgccgccgccgcgacttc
gagttccggctccgccgccgctccccgctccgacaggacttcctcgactacatcgcctac
gagctccgcctcgactcgctacgcaacctccgaaagcgcgcaatcatacgcgacgccccc
tctgaatccgacgacgaccatggcagcgccgacgaggaaggcacgaagaagaagaggaag
aggaggaacaagaagtggaagaagtccatctccgacgtcgcgggggtcctccgcatactc
gacatctacaggatggccaccgtcaggttcaagggagacctcgacctatggttccgatac
ctcgagttctgccgcggcaagcgccacgggagaatgaagcaggttctggcgcaagctatt
cgcttccatcccaaggtccctgggctttggatctatgcggcagcgtgggaattcgaccag
aacctcaatgtcgctgcagcacgtgcactgatgcagagtggcctcaggtcctgtccacaa
tcagaggatatgtggattgagtatcttcgcatggagcttacctacctgaacaagctcaag
gcgcgaaaggtggctctcggagaggatgtgaagacgctgcaaaagagcgataatgatgct
ggcaagtggaaagatgagaacaaagaacttttcatgccactgaatgaacaagatgatggg
cccgaggactccaagcgagctggagatgctctggaggagaaggaagacatgttctggcgg
caaggactgttaatcatccaaaccatatatcatggtgcggtggaagctcttccatcaagc
ttaaccttgcggaagaaattcttggagatattaaacagtgtggacttgacacattctgat
gagttgaagatagaggtcctggatgacgtcaagaaagatttctcccattgtgaggactac
tgggattggtttgctaggcttcagcttactgatttaaataatcccaacggcttgaaggga
aaggacgctctatcgaataagttgaacaaatcaattcaggtatatgatgaagctgtcaga
aggctgccaacttccaaaatgtattccctttatgcaaaattttggatggatgttctatac
cctgacagagaagattccattgcatcattccaaaattctgaatttgatgcttcggaattc
acttcatctatactgaaagtttatgaaagtgctgaatcatgtgggtgtcttactgaggat
cttgcttgccaatatgtatcattttgtttgaaactcgaaaggctggaggaagctaagaat
ctcgcagaaaagctttgcaacggtcctctttcagatgctgcaaatttgtggagcctgaga
gcttctatggagataaattcggttgctactgcaggcagtactccgttcagcaagaagaaa
ttgagttgtttatttgatctattcaacactgttctttccaaattacccgttactcagact
gagggattgtggcacatggccatgaaactgttttctaatgagaagatatattttgagaag
ttagtgaaatgtgcaatgctttcgttaagtttggctggtgggaatgattcgggcgcatcg
gttgcttctgctatcatcggatggtatttgcaaagagatggtatgaaacaagctaggaag
atgtataagaggcttctcgctctaccacgtccgagcctaaagttgttcaagtactgcata
gagctggaaactaacctcgcatcgctaggagacaatagtgcccttgcaaatgcccgtaag
ctttatgattcagcaatcgactactatccccaggaaagagaagtgtggagaaactactac
aacctggaattgaaggtgggaacatcggaaaccgccaatgctgtttacaggcgtgctcgt
aaggtgctcagtgactccactgccctgaccgctcccagtagctag
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