Panicum virgatum (switchgrass): 120659404
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Entry
120659404 CDS
T07260
Name
(RefSeq) small RNA 2'-O-methyltransferase-like isoform X1
KO
K20798
small RNA 2'-O-methyltransferase [EC:
2.1.1.386
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120659404
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.386 small RNA 2'-O-methyltransferase
120659404
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120659404
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hen1_Lam_C
dsRBD2
Hen1_LCD
Methyltransf_12
Methyltransf_23
Methyltransf_11
Methyltransf_25
Methyltransf_31
DSRM_2
dsrm
Methyltransf_33
MTS
Motif
Other DBs
NCBI-GeneID:
120659404
NCBI-ProteinID:
XP_039793468
LinkDB
All DBs
Position
2N:complement(4783844..4788925)
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AA seq
957 aa
AA seq
DB search
MPTAAPTPKAVLHQRFGTKARYTVEEMREAVGGCPGLAPQTRSVYRCALELPGLSVATPG
TFVRKKDAEQAAAQIALDKLGIQPPSNIPSTPEEAWDELIARISGFFIDENFLSSTHPLV
GHLSVTLRRTGDLIGRLPLSAIAACDVKVNTLCKVINPKAEFDPLLVLSLMYNAAKQSPG
VSVSDSNFWIQSQKPYSPEAVDLALKRWSFTSDPVEVEAILVPHVLENELKIITINLRDN
KHYMGYVAEKLTVSDSSQVLVSRTIGKASSEIRLYFAAPSVHFVSDMSKNVLACHGDGDI
NCQVNKRASYISGQTIYGDALLANIGYTRRDSELHTEDVNLCTYYRILLGKLPDGNCKMS
RDAILAAELPSAYSRFSWKGLSPRDLLCSFCRNQRLSEPLFAVNRVSCDMLTSAVSSEER
GEPAKSVENQYTNDVRIDKENPDIFTCEVKICSRKQEILLEYSAAHTWSKESDAIQNSAL
KVLIWFNNYFKQLNTKMDKLYLSKCIDSFKIHPNIFLQEFAMCLSVYSKTGCNDSGICSS
VGPFIVDTPKKQLESTATLTHIEGPDSGVFPSHGSLTSISYTASLVMKDKAKIYLLESHN
EFEFEIGTGAVNNQLESCVTQLSVNQAACFIAELPPRDLILAAASEFSHELSNVSRESCS
LEFSVKVLQVTEPLEDRMEKALFSPPLSKQRVEFAVQHINELHATTLVNSTSFSCPLFMK
IISFLIVKVHFQVDFGCGSGSLLDSLLEHPTTLEKLVGVDISRKGLTRAAKSLHQKLSKK
SLVQTTVPTAVLYDGSITDFDSRLYGFDIGTCLEVIEHMEEDQASLFGNVVLSSFRPTVL
IVSTPNYEYNPILQRSAMPNKDDEADENAGPCKFRNHDHKFEWTRAQFQCWATDLAVKHN
YSVEFCGVGGSGEEPGYASQIAVFRRMARDMEEMCLNKDQDQPYELLWEWPNASIPV
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgccgacggcggcgccgacgcccaaggcggtgctccaccagcggttcggcaccaaggcg
cggtacacggtcgaggagatgcgggaggccgtgggcggctgcccgggcctcgcgccgcag
acccggagcgtctaccggtgcgcgctcgagctcccgggcctctccgtcgccacgcccggc
accttcgtccggaagaaggacgccgagcaggccgccgcgcagatcgcgctcgacaagctt
ggtattcagcccccatcaaatattcccagtacaccagaagaagcttgggatgaactgatc
gctcgcatatctggtttcttcatagatgagaacttcctatcatctacccatcctctggtt
ggccatttgagtgtgactctcaggagaactggggacctcattgggaggttacctttgtcg
gctattgctgcatgtgatgtgaaggtcaatacattgtgtaaagtgattaaccctaaggca
gaatttgatcctctcttggtcctttcattaatgtacaatgctgcaaaacaatctcctgga
gtctcggttagtgatagcaacttctggattcagagtcagaagccctattctccggaggct
gttgacttggcacttaaacgttggtcttttacatcagaccctgtagaagtagaagcgatt
cttgttccccatgtgttggagaatgaactgaagataataactattaatctacgagataat
aaacattatatgggttatgtcgcagaaaagctcacagtgagtgattcctctcaagttctt
gtatcaagaacaattggaaaagcatcttctgagataaggctgtattttgcagccccaagt
gtacattttgtttctgatatgtcaaaaaatgtgcttgcttgtcatggtgacggtgacatc
aactgccaagtaaataagcgagcctcctatatttctggtcaaacaatttatggagatgcg
cttttggcaaatatcggatacacaaggagagattcggaacttcacactgaagatgtcaat
ctatgcacctattacaggatacttctgggcaagttacctgatggaaattgtaagatgtct
agggatgcgattcttgcagcagagcttccatctgcgtactctcgtttcagttggaaaggc
ctttccccacgagatctcctttgttcattctgtcgcaatcagaggttgtcagagcccctt
tttgctgtcaatagggtctcctgtgatatgttaacatcagctgtgagctctgaagaaaga
ggagaaccagcaaagagtgtagaaaatcagtacaccaatgatgttagaatcgacaaggaa
aacccagatattttcacatgtgaagtgaaaatatgttcacggaagcaggagattttacta
gagtattctgcagctcacacttggagcaaggaatctgatgctattcagaattcggcattg
aaggtcttgatttggttcaacaattatttcaagcaactaaacacaaaaatggacaagcta
tatctttccaagtgcattgacagtttcaagatacatccaaatatttttctgcaagaattt
gcaatgtgcttatctgtttatagtaaaactggatgcaatgattcaggaatctgcagttca
gttggaccttttattgtggatacaccaaagaagcagcttgaaagcactgcaactttaaca
cacattgagggcccagattctggtgttttcccatcccatggatcattaacttccataagt
tatacggcttcccttgtgatgaaggataaagcaaaaatatatttgttggaaagccacaat
gagtttgagtttgagatagggacgggtgctgttaataatcagcttgaatcatgtgtaact
cagctatcagtaaatcaagctgcatgttttatcgctgaactgcctcctagggatttgatc
ctggctgcagcttctgagttctcacatgaactttccaacgtatctagagagagctgctct
ctggagttctctgtaaaggttttgcaggtaaccgaaccattagaagatagaatggaaaag
gccttgtttagccctccattatcgaaacaaagagttgaatttgctgtccagcatatcaac
gagctgcatgctaccacacttgtaaattctacctcattctcttgtcccttatttatgaaa
attattagttttctcatagtaaaggtgcattttcaggtcgattttggttgtggatctggc
agccttcttgattcattgttagagcatccaaccacactagaaaagcttgtcggtgttgat
atttctcgaaaaggcctcacacgcgcagcgaagagtcttcatcagaagctgagcaagaaa
tcgttggtgcagacaactgttccaactgctgtgctctatgatggatccataacagacttt
gattctcgcttatatgggtttgatattggcacttgtcttgaggtgatcgagcacatggag
gaggatcaagcgagtttatttggcaatgtcgtcttgagctcattccgcccgacggtgctc
attgtttcgacacccaactacgagtacaaccctatcctccagaggtcagctatgcccaac
aaggacgacgaggcggacgaaaacgctggtccctgcaagttccgtaaccacgaccacaag
ttcgagtggaccagagcgcagttccagtgctgggctactgacctcgcggtgaagcataac
tacagcgtggagttctgcggcgttggcggctcaggcgaggaaccaggctacgcttcccag
atcgctgttttcagaagaatggcacgcgatatggaagagatgtgtctgaataaagaccag
gatcagccttacgagcttctctgggaatggcccaacgcgtcgatacccgtctga
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integrated database retrieval system
