Panicum virgatum (switchgrass): 120659405
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Entry
120659405 CDS
T07260
Name
(RefSeq) syntaxin-132-like
KO
K08486
syntaxin 1B/2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120659405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120659405
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120659405
Membrane trafficking [BR:
pvir04131
]
SNARE
Syntaxin (Qa)
Stx-PM
120659405
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
120659405
Exosomal proteins of other body fluids (saliva and urine)
120659405
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
Vac_Fusion
COG2p_C
Rv1476
Fusion_gly
FapA
DUF6548
Stonustoxin_helical
cas_Cpf1_2nd
Motif
Other DBs
NCBI-GeneID:
120659405
NCBI-ProteinID:
XP_039793470
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Position
2N:complement(4837177..4841339)
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AA seq
304 aa
AA seq
DB search
MNNLLSDSFELPRRDSSRDADIEMGLHQADASDNLKDFLKKVDAIESLIAKLTNLLNKLQ
TANEESKAVTKASAMKAIKQRMEKDIDEVGKIARQAKTKVDELEKDNLSNRQKPGCGKGS
AVDRSREQTTGAIKKKLKERMDDFQALREAIRQEYREVVERRVFTVTGNRPDEETIDDLI
ETGKSEQIFKDAIQQQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVLVEAQG
DMINNIETHVSNATNHIQQGVSALQNAKRLQKNSRKWMCYAIIILLVIVVIIVVAVIQPW
KKGT
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacctcctttcggattcctttgagctccctcggcgggactcttcaagagatgca
gacattgaaatgggattgcatcaggctgatgcttcagacaacttaaaggatttcttgaaa
aaggttgatgcaattgagagcctaattgcaaagctgacaaatctattgaataagcttcag
actgcaaacgaggaatccaaagcagttacaaaagcaagtgccatgaaagcgatcaagcag
cggatggagaaagatattgatgaagtggggaaaattgctcgtcaggcgaagacaaaagtt
gatgaactcgaaaaagataacttatcaaataggcaaaaacctggatgtggaaaggggtct
gctgtggaccggtcaagagaacagactactggagcaattaaaaagaaattgaaggagcgg
atggatgattttcaggctttaagagaagcaatcaggcaagaataccgtgaggttgttgaa
agaagggtttttactgtaactggtaatcgtcctgatgaagagacaatcgatgacttgata
gagactggaaaaagtgagcaaatcttcaaagacgcaatccaacagcagggaagaggccag
atactggacaccgttgctgaaatacaggagcgacatgatgctgtaagggatctagagagg
aagctacttgagttgcaacagatattcatggacatggcagttcttgttgaggctcaagga
gacatgatcaacaacatcgagacacatgtttcgaatgctaccaatcacatacagcaaggc
gttagcgctctacagaatgccaagagattgcagaagaattcgagaaagtggatgtgctat
gccatcatcatactgctggtgatagtggtgatcattgttgtggcagtcatccagccgtgg
aagaagggcacttaa
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