Panicum virgatum (switchgrass): 120659422
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Entry
120659422 CDS
T07260
Name
(RefSeq) BTB/POZ and MATH domain-containing protein 5-like isoform X1
KO
K10523
speckle-type POZ protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120659422
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
120659422
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Gene cluster
GFIT
Motif
Pfam:
MATH_2
BTB
BACK_BPM_SPOP
TRAF-mep_MATH
BACK
BTB_2
Diphthamide_syn
SAM_5
Motif
Other DBs
NCBI-GeneID:
120659422
NCBI-ProteinID:
XP_039793498
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Position
2N:complement(5028987..5034203)
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AA seq
438 aa
AA seq
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MDEDAGDASPPPAPPPPAHAHAHPPAPQPPTAAAPSQRDVSASPTSSRSVTETVNGSHRF
VIQGYSLAKGMGVGKHIASETFSVGGFQWAVYFYPDGKNPEDNSAYVSVFIALASEGTDV
RALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRTALETSDFLKD
DCLKINCTVGVVVSTIDYSRPHSIQVPDSDIGYHFGSLLDNQEGVDVILNVGGERFHAHM
LVLAARSHVFRSQFFDDESEGEKNEVDESDELREFSIDNMEPKVFKAMLHFIYRDTLVDE
NELAASSSDSSVFDTLAAKLLAAADKYDLGRLRLLCESYLCKGISVASVASTLALADRHH
AMELKAVCLKFAAENLSAVIRTEGFLYLRDNCPSLQSEILKTVAGCEEQCSSGGKSQSVC
AQLSDGGETSGRRVRPRI
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggacgccggcgacgcctcgccgccgccagcgccccctcccccggcgcacgcg
cacgcgcaccctcccgccccgcagcccccgaccgccgcggccccctcgcagcgggacgtg
tcggcgtccccgaccagctcgcgctccgtgacggagaccgtcaacggctcccaccggttc
gtgatccagggctactcgctggccaagggcatgggcgtggggaagcacatcgccagcgag
accttctccgtgggcgggttccagtgggcggtctacttctaccccgacgggaagaacccc
gaggacaactccgcctacgtctccgtcttcatcgccctcgcctccgagggcaccgacgtc
cgcgcgctcttcgagctcacgctcctcgaccagagcggcaagggcaagcacaaggtccac
tcccacttcgaccgctccctcgagtcgggcccgtacaccctcaaataccgcggatccatg
tggggttacaaacggttctttcggcgaactgccctcgagacttcagactttcttaaagac
gattgcctgaagataaattgcactgttggtgttgttgtgtcaacgattgattactccaga
ccacactctatacaggttccagactcagacatcggctatcattttggttcactgttggac
aatcaggagggtgttgatgtcattcttaatgtgggaggagagaggtttcatgcccatatg
ttggtgttggctgcacggtctcatgtattcagatctcaattttttgatgacgaatctgag
ggagagaagaacgaggttgatgaaagtgatgaactgagagagttttctattgataatatg
gagccaaaggttttcaaggcgatgcttcatttcatctatagagatactcttgttgatgag
aacgagttggctgcatcaagctctgatagttctgtctttgatacactggcagcaaaattg
ttggctgcagcagacaagtatgacttaggaagactaagattgctatgcgagtcttacctg
tgcaagggtatatcagtggcctcagttgcgagtacactagcattggctgatcgtcaccat
gctatggagcttaaagctgtttgcctaaaatttgctgccgaaaatctttcagctgtaatc
cggactgagggattcctttacctcagggacaactgcccatctctgcagtcagagatactg
aaaactgttgcagggtgcgaggagcagtgcagcagtggtgggaagagccagagtgtttgt
gcgcagctttcagacggtggcgaaaccagtggacgcagggttaggccaagaatctga
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