KEGG   Panicum virgatum (switchgrass): 120659478
Entry
120659478         CDS       T07260                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120659478
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120659478
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    120659478
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     120659478
SSDB
Motif
Pfam: MMS19_N MMS19_C GHL13 Cyt_b-c1_8
Other DBs
NCBI-GeneID: 120659478
NCBI-ProteinID: XP_039793570
LinkDB
Position
2N:5781323..5799694
AA seq 1140 aa
MARVPPGEWVPHVEAYVDVSRPAAQHSASVDALAAMVNKDRLTLFDLVSKMEMYLTTTDH
IVRSRGILLLGEILSRISVKWLDVSTITTLSDFFISRLSDWQAIRGALVGCLALLQRKQG
VGCIVIADVKRLVESFSQNVPVQSLAAADRKLCFQILSCILDRYPEAVKTMDGEKLYWIC
EAIDEEKDPECLKLAFHVVEVVMKLFPDPSGLEAQFASEFFEILSKYFPVYFTHGAGDDL
NATRDDLSRALMHAFCSTPYFEPFAIPLLLDKLSSSLPLAKLESLKYLDNCIRFYGADRM
VRHASAVWLKLKEVIFSLSPEQLLLTSGSPKDAEKNKNQMVSEALNCLKTAITYIDSPDK
DLFINLILLDEDIVNKIHSISSAEKSLLSSLEDLAQVHALGSVISILAESSTYFCTRVLQ
EHLTHLVDILGTSTDYESQCNGSSSAAINYGALYLCVQMLTSCREVALVSYAECSSIKLA
KESWWLILEKKLDQLIHLLGSFLTLDSQSEQSMFRQEYVACAVKGLLTLATFPEQCSPLM
ANAFEDILAMLTSVITSKFENVDLWRLSLKALTSIGSSIVKFNASQKEVIYCRTVVDKII
SLLQSYDGSMPLSLRLEASYEVGTVGLNYMLLVARSLEGAVITSISKAKGRMECAEYVAH
LFECYSSRVLPWLFTSGGINELALSFAMHLLDEIKDLSMLDRISSQGLLDSLMTGMKLLV
GVCTEEQQTLIVQKAYSMVSSVLPLPPKSTTQCLLAVDELVPSHSVQETALIGMLSSVIV
GLRLQTPVPDMIVMINLLTVFLLNGKLPAAYGLASIFNKHLHNPEFSHENQLDKILDNIL
ERCFSTVLATSYLKISHSSVDTSNDANFLYMSSGNIPSKIDILSGLAWIGKGLLMRGDEK
MKDISMFLLKCLCSGETLASSPAREEESRGSDSSDTSIATSAADAFNVMMSDSEVCLNKK
FHARIKPLYKQRFFSTMTPIFLSKIKEATSMTTKLALYRAFGHIISNAPVPAVITEAHQI
LLVIVESLAKLSVDIQDKDLVYNLLLVLSGMLMDEKGKECILDNIHITISVLTQLVSYPH
MMVVRETALQCLVAFSTFPHSKVFPMRLKVLQAAIKALDDKKRAVRQEAVRCRQTWQSFA
NT seq 3423 nt   +upstreamnt  +downstreamnt
atggcgagggtcccccccggggagtgggttccccacgtagaggcctacgtcgacgtctcc
cggcccgccgcccaacactctgccagtgtggatgcgcttgcggccatggtgaacaaggac
aggctgaccctcttcgatttggtgtccaagatggagatgtatttgacgacgacagaccac
attgtgagatcaagagggatactgcttctgggggaaatactgtctcgaatttcagttaaa
tggttagatgtcagtaccatcacaactttgtcagatttctttatatcaagattgtcagat
tggcaagcaatacggggagcactagttggttgcctggcactattgcaaagaaaacaaggt
gttggttgtatcgtgattgcagatgtcaaaagacttgtcgagtctttctcacagaatgtc
ccagtgcagtcacttgcagctgcagaccgcaagctgtgcttccaaattctgagctgcata
ctggatcgataccctgaagccgtcaaaacaatggacggtgagaagctgtactggatctgt
gaagcaattgatgaagaaaaggacccagaatgtttgaagcttgcttttcatgtagtcgaa
gttgtcatgaagctatttccagatccgtctggtttggaggcacaatttgcaagcgaattt
tttgagattctgagcaagtattttcctgtctacttcacacatggagcgggtgatgattta
aatgctacaagggatgacctttccagagcattgatgcatgccttttgttccaccccctat
tttgagccatttgccatccctttgcttcttgataagctttcttcctctcttccgttagca
aagcttgaatcattgaaatatctggacaattgcattcgcttctatggagctgatagaatg
gttagacatgcatcggctgtgtggcttaagttgaaagaagtgatttttagcctttctcca
gagcaacttctattaacatcagggtctccaaaagatgcagagaagaataagaatcaaatg
gtctcagaggctctgaattgtttgaagactgctattacgtatattgattctccagataag
gatcttttcatcaatttgatcttgttggatgaggacattgtgaataagatccattctata
tcaagtgcagaaaagtccttattgagttcattggaagatttggcccaagtacatgcactt
ggaagtgtcatttctattcttgctgaatcatctacatatttctgtactagagttcttcaa
gagcatcttacacacttggtggatattttgggaacctcaactgactatgaatctcagtgt
aatggatcatcttctgctgctatcaactatggagcactctatttatgtgttcaaatgctt
acatcctgtagagaagtggctttggtatcttatgcagagtgttcttctattaaattagca
aaggagtcctggtggcttatcttagagaaaaagttggatcagctaatccatctccttgga
tcatttttaactttagattctcaatctgagcagtcaatgttcagacaagaatatgttgcg
tgtgctgtgaagggcttgctaacactagcaacattcccggaacaatgctcacctttaatg
gcaaatgcttttgaggatattctggctatgcttacctcggtgattacaagcaagtttgaa
aatgtagatttatggagattgtcattgaaagcattgactagcattggttcatctatcgtc
aagttcaatgcttctcaaaaggaagtgatttactgcagaacagtagttgacaagattatt
tctttgcttcaatcttatgatggctcgatgcctctcagcctaagacttgaagcaagttat
gaagttggaacggttgggttgaactatatgttactggttgctagatcacttgaaggagct
gtcatcactagtatttctaaggctaagggaagaatggaatgtgctgaatatgtagcccat
ttatttgagtgctactctagtcgggtccttccttggctgtttacttctggtggtatcaat
gaacttgctttgagcttcgcaatgcatctcttggatgagataaaggacttatctatgtta
gatagaatcagttcacagggcctccttgactcactgatgacaggaatgaagcttttagtt
ggagtctgtacagaggagcaacaaacactgattgtgcagaaagcatatagcatggtatca
tcagtgctcccactcccaccgaaatcaacgacacagtgtcttttggctgtagacgagtta
gttccttcacattctgttcaagaaactgctctgatcggcatgctttcatcagttatagtt
ggccttcggcttcaaacacctgtcccagatatgatagtgatgatcaacctcttgacagtc
tttctgctgaatgggaaactgccagctgcttatggattagcttctattttcaataagcat
ctacacaatccagagttttcacatgagaatcaactggataaaatacttgataatattctt
gagaggtgtttctcaactgtattagccaccagctacttaaagatatcccactcttctgtt
gacacttcaaatgatgctaatttcttatacatgtcctctggaaacataccttcaaagatt
gatatcttgtctggcttagcctggatcggcaaaggattacttatgagaggagacgagaag
atgaaggacatttcaatgtttctgcttaagtgtctatgctcaggcgaaactttggctagt
agtccagctcgcgaggaagaatctcgtggcagtgattcatcagatacttctattgcaaca
tccgcagctgatgcgttcaatgtaatgatgagtgattcagaagtctgcctaaataaaaaa
tttcatgcaagaataaagccattatataagcagcgtttcttctcaacaatgacaccgatc
ttcctctctaaaatcaaggaagcaacttcaatgacaacaaagttggcactgtaccgagct
tttgggcatatcatttcgaatgctccagtacccgctgttataactgaagctcatcagatt
ttacttgtgatagttgaaagcttagctaaattgagtgtggatattcaggacaaggatttg
gtgtacaatttgctacttgtcctgtctggaatgttaatggatgaaaagggcaaagagtgc
attctggacaatatccacatcaccatcagtgttcttacccaacttgtttcctatcctcat
atgatggttgttcgggagacagctttacaatgtttagtagccttttctacttttcctcac
tcaaaagtcttccctatgcggctaaaggttctacaagcagcaatcaaggctcttgatgat
aagaaaagggctgttcgtcaagaggctgttcggtgtcgacaaacatggcagtcgtttgct
taa

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