Panicum virgatum (switchgrass): 120659600
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Entry
120659600 CDS
T07260
Name
(RefSeq) probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X1
KO
K01662
1-deoxy-D-xylulose-5-phosphate synthase [EC:
2.2.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00730
Thiamine metabolism
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
120659600
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120659600
Enzymes [BR:
pvir01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.7 1-deoxy-D-xylulose-5-phosphate synthase
120659600
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Gene cluster
GFIT
Motif
Pfam:
DXP_synthase_N
Transket_pyr
Transketolase_C
E1_dh
Transketolase_N
TPP_enzyme_C
Transketolase_C_1
Motif
Other DBs
NCBI-GeneID:
120659600
NCBI-ProteinID:
XP_039793728
LinkDB
All DBs
Position
2N:7257859..7261130
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AA seq
718 aa
AA seq
DB search
MALQASTPSVFRAVPATAHAPCRRQQFQVRASAAAQSAGGSSGGADGKMVVPKEPRPSSA
PWKVEFSGEKPATPLLDKVNYPVHMKNLSTPELEQLAAELRAEIVHTVSKTGGHLSSSLG
VVELAVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSQMHTIRQTSGLAGFPKRDESAH
DAFGAGHSSTSISAGLGMAVARDLLDRKNHVISVIGDGAMTAGQAYEAMNNSGYLDTNMI
VVLNDNKQVSLPTATLDGPSKPVGALSRALTKLQSSTKFRRLREAAKTVTKQIGGPTHEV
AAKVDEYARGMISASGSSLFEELGLYYIGPVDGHNVEDLVAIFEKVKSMPAPGPVLIHIV
TEKGKGYPPAEAAADRMHGVVRFDPSTGKQFKSKSPTLSYTQYFAEALIREAEADDKVVA
IHAAMGGGTGLNYFQKRFPEKCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGYD
QVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPADEAELMHMV
ATAAAIDDRPSCFRFPRGNGIGATLPPGNKGTALEVGKGRVLVGGTRVALLGYGTMVQAC
LKAAEALKEHDVYVTVADARFCKPLDTELVRELAAEHEVLITAEEGSIGGFGSHVAHYLS
LAGLLDGNLKLRSMFLPDRYIDHGAPQDQIEEAGLTPRHIAATVLSLLGRPLEAMQLK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcgctccaggcatcgacgccttccgtgttccgcgcggtcccggccaccgcccacgct
ccctgccggcggcagcagtttcaggtgcgcgcgagcgcggcggcccagagcgccggcggc
agcagcggcggcgccgacgggaagatggtcgtccccaaggagccgaggccgagctcggcc
ccgtggaaggtggagttctccggcgagaagccggcgacgccgctgctcgacaaggtcaac
tacccggtccacatgaagaacctctcgaccccggagctggagcagctggcggcggagctc
cgcgcggagatcgtgcacacggtgtccaagaccggcggccacctgagctccagcctgggc
gtggtggagctcgccgtggcgctgcaccacgtgttcgacacccccgaggacaagatcatc
tgggacgtcggccaccaggcgtacccgcacaagatcctcaccgggcggcgctcccagatg
cacaccatccggcagacctccgggctggcgggcttccccaagcgcgacgagagcgcgcac
gacgcgttcggcgccggccacagctccaccagcatctcggcggggctgggcatggccgtc
gcgcgggacctcctggaccgcaagaaccacgtcatctccgtcatcggcgacggcgccatg
accgccggccaggcctacgaggccatgaacaactcgggctacctcgacaccaacatgatc
gtcgtcctcaacgacaacaagcaggtgtccctccccaccgccacgctcgacgggccgtcc
aagcccgtcggcgcgctcagccgcgcgctcaccaagctccagtccagcaccaagttccgc
cgcctccgcgaggccgccaagaccgtcaccaagcagatcggcggcccgacgcacgaggtc
gccgccaaggtcgacgagtacgcgcgcggcatgatcagcgcctcgggctcctcgctcttc
gaggagctcggcctctactacatcggccccgtcgacggccacaacgtcgaggacctcgtt
gccatcttcgagaaggtcaagtcgatgccggcgccggggcccgtgctcatccacatcgtc
acggagaagggcaaggggtacccgccggcggaggcggcggccgaccggatgcacggcgtc
gtccgcttcgacccgtcgacggggaagcagttcaagtccaagtccccgacgctgtcctac
acgcagtacttcgccgaggcgctgatccgggaggcggaggccgacgacaaggtggtggcc
atccacgccgccatgggcggcggcacggggctcaactacttccagaagcgcttcccggag
aagtgcttcgacgtcggcatcgcggagcagcacgccgtgacgttcgcggcggggctcgcc
accgaggggctcaagcccttctgcgccatctactcctccttcctccagcgcggctacgac
caggtggtgcacgacgtcgacctgcagaagctgccggtgcgcttcgcgctcgaccgtgcg
gggctcgtcggcgccgacgggcccacccactgcggcgccttcgacgtcacctacatggcg
tgcctccccaacatggtggtcatggcgcccgccgacgaggccgagctgatgcacatggtc
gccaccgccgccgccatcgacgaccgccccagctgcttccgcttcccgcgcggcaacggc
atcggcgccaccctcccgccgggcaacaagggaacggccctcgaggtcggcaagggccgg
gtgctcgtcggcggcacccgggtggcgctcctcgggtacggcaccatggtgcaggcctgc
ctcaaggccgccgaggcgctcaaggagcacgacgtgtacgtgaccgtcgccgacgcccgc
ttctgcaagccgctcgacacggagctcgtcagggagctcgccgccgagcacgaggtgctc
atcaccgccgaggagggctccatcggcggcttcggctcccacgtggcgcactacctcagc
ctggccggcctgctcgacgggaacctcaaactgagatccatgttcctgccggaccggtac
atcgaccatggcgcgccgcaggaccagatcgaggaggccgggctgacgccgcggcacatc
gccgccaccgtgctgtcactgctggggaggccattggaggccatgcagctcaagtga
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