Panicum virgatum (switchgrass): 120659652
Help
Entry
120659652 CDS
T07260
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120659652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120659652
03041 Spliceosome [BR:
pvir03041
]
120659652
03036 Chromosome and associated proteins [BR:
pvir03036
]
120659652
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120659652
Spliceosome [BR:
pvir03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120659652
Complex B
120659652
Complex C
U2 SnRNP specific factors
120659652
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120659652
TFTC complex
120659652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
120659652
NCBI-ProteinID:
XP_039793789
LinkDB
All DBs
Position
2N:complement(8411412..8421061)
Genome browser
AA seq
1365 aa
AA seq
DB search
MEASTADAGGASTSSAAASSSSGPSTSASASASAAADSGATHYLAKRVLRGSAVLHVAEG
CFRSPDSADVVLAKETSLELVAVGDDGVLQSICEQDMFGIVKDIGVLQWHSRHIGLIPQI
EHKDLLVVLSDSGKLSFLYFCPEMHRFFAIANIELSKPGNLRHQLGRVLAIDRESSFVAV
SAYEDKFALIHVSVCQSPHGSGRGVISDKKYFYPPENEEDARTVSGASRTSIRGTIWTMR
FISTSQGEEYYPVLAMIINRKGSDVNDLSLFGHESSSDVISHISDYSEIGPLALDISEIP
EMLGFALLFRVGDALLLDLRNPSNVCCIRRISLTTSLIGEQVTVEDSCPGLDVDDDVAAC
ALLELRDSANNILKDDGYMDIDGVDSRGSVKSRIICSWSWEPPDPIRQGWARLLFCLDDG
EFHILDFTSDVEGVKLYTFEYVDRSLPCKPLLWMKNTMIIGFVEMGDGMIFKLGHRRLFL
KSTIQNVAPILDLAIADYHGEKQDQMFACCGMCPEGSLRVLRNGVNVEKLLRTEAIYQGV
TGLWTLRMKTNDAYHSFLVLSFVEETRILSVGLSFNDISDAVGFQPDVCTLACGLVTDGL
LVQIHSKGVKLCLPTVYAHPEGAPLTSPICTNWYPDITISVGAVGHNIVVVATSNPCCLY
VLGLRSSSPYQYELYETQHVQLQYEVSCISIPQEELRPDNVTLSGGERDNFSNNPSADVN
VRKFAVIGTHKPSVEIISVEPGEALRLLTIGTISVNNALGAPVSGCIPENVRFVAAERFY
ILAGLRNGMLLRFESEATEHYFPGSFYKDSSIPSVTAFLQLISIRRIGITPVFLVPIHDS
ANADIIVLSDRPWLLHAARHSLAYSSISFLPASHVTPVSSVDCPNGLLFVAESCLHLVEM
VHGKRLNAQKFSIGGTPRKVLYHNESRTLLVLRTGLSGASCSSDIVQVDPQNGVLLSRYK
CEPGETAKCMQITKIGSDQVLVVGTSRSAGRSMMSNGEAESSTKGRLIVLSLEAVESPRE
SSSFIPTSSFNPSSHSGSPFHDIIGYTTEEFSSNSLCSSPDEFCCNQIQAEQMAGHLRSL
SHATLSGAVLAVYPYLDRYVLAAAGNAIYVFGFANENPHRMKKCTVGRTRFTITCLKTFA
SRIAVGDCRDGVLFYSYNESHRKLELIYSDPAQRLVGDIALLNCETAVVSDRRGSISVLS
STRLEISESPQKNLAVNCSFYMGETAMSIQKTAFRYRLPIDDDTDPVLESAYNCIVASTL
LGSLFVMIPLTSEEHQLLQDVQERLSVHPLTAPVLGNDHAEFRQRGIPSGIPPILDGDML
VQFLELTGEQQQAILAHALPGKGPRRPVSVFEVLRTLERVHYALN
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggaggcctccaccgccgacgccggcggcgcctccacctcgtcggctgcggcgtcctcc
tcctcgggcccctccacctccgcgtccgcgtccgcctccgccgctgccgactctggcgcc
acccactacctcgccaagcgggtgctccggggcagcgctgtgctccacgtcgccgagggg
tgcttccgctcgcccgactccgccgacgtcgtcctcgctaaggaaacttcactagagctg
gttgctgttggcgatgatggtgttttgcagtcaatctgtgaacaagacatgtttgggatt
gtaaaagatattggtgtcttgcagtggcactctagacacattggtttaattccacagata
gaacacaaggatcttctggttgtgctttctgattccggaaagctttcctttctttatttt
tgtcctgagatgcataggttctttgcaattgccaatattgagttatccaaaccaggaaat
ctgaggcatcagctgggaagagttttagctatagatcgagaatctagttttgttgctgtc
agtgcatatgaggataagtttgcccttatacatgtttcagtgtgccagagtcctcatggt
tctggcagaggtgtcatttctgacaagaaatatttttatccaccagaaaatgaggaggat
gccagaactgtaagtggtgcatctaggaccagcatccgaggtacaatttggaccatgcgc
ttcatatcgacatcccaaggtgaagaatactatccagttttggcgatgataatcaacagg
aagggctctgatgtgaatgacttgtcattatttggacatgaatccagcagtgatgttatc
agccacatctctgattattcagaaatcggaccattagcacttgacatatcagaaattcct
gaaatgcttggctttgcacttctgtttcgtgttggtgatgctttactgttggatcttaga
aacccaagtaacgtctgttgtatccgaagaattagcttaactactagcctgattggagaa
caagtcactgttgaagattcctgtccaggattagacgttgatgacgatgtggctgcttgt
gctttgttagaactgagagattctgcaaataatatactgaaggatgatggttatatggac
attgatggcgttgacagcagaggtagcgtgaaatcaaggatcatttgctcatggagctgg
gagccacctgacccaatcagacaaggatgggcaaggcttctattttgcttagatgatgga
gaatttcatattttggattttacttctgatgttgaaggagtcaagctgtacacctttgag
tatgttgataggagtttgccctgcaaacctcttttgtggatgaaaaatacaatgataata
ggctttgtagagatgggggatggtatgatctttaaacttggccatcgtagattgtttctt
aaaagcacaattcagaatgtagcaccgatattggatctagcaattgctgattaccacggt
gagaaacaggatcagatgtttgcatgttgtggtatgtgccctgagggctctttgcgagtt
ttacgaaacggtgtcaatgtggagaaacttctgaggactgaggctatttatcagggtgtt
actggattgtggactttgagaatgaaaacaaatgatgcttaccactcttttcttgtgtta
tcatttgtggaggaaaccagaatactgtcagtaggactaagttttaacgacatcagtgat
gctgtgggattccagcctgatgtttgcactttggcgtgtggtttggtgactgatggtttg
ctcgtgcaaattcacagcaaaggtgtaaagctctgtttgcctacagtatatgctcaccct
gagggtgcccctttaacttctccaatttgcaccaactggtaccctgatatcactatcagt
gttggtgctgtaggacataatattgttgttgtcgctacatcaaatccctgctgcctatat
gtccttggactcagatcatcttcgccttaccagtacgaattgtatgagacacagcatgtt
caattacaatatgaagtatcatgcatatccatcccacaagaggaattgagacctgataat
gtaacattgagtggtggagagcgtgataattttagtaacaatccctcagctgatgttaat
gtccgcaagtttgctgttattggaactcataaaccttctgtggaaatcatctccgtggaa
cctggagaagcattaaggttattgactattgggactatatcagtgaacaatgcacttggt
gctcctgttagtggttgtatacctgaaaatgtgaggtttgttgcggctgagaggttttac
atccttgcaggcttgagaaatggaatgctactaagatttgaatcagaagcaaccgagcat
tattttcctggttccttctacaaggactcttctatcccttctgttactgcattccttcag
ttgatttcgataaggcggattggaattactcctgtattcttggtaccaatacatgattca
gctaatgctgatatcattgttctcagtgataggccttggctattacatgcggccagacat
agtctggcatattcatccatttcatttctacctgcttcgcatgtgacaccagtgtcatct
gttgattgccccaatggtctactgtttgttgctgagagctgtttgcatttggttgaaatg
gttcatgggaagcgattgaatgcacaaaagttttcaattgggggaactccaaggaaagtg
ctataccataatgaaagcagaacactattggtactaagaactgggctaagtggtgcatca
tgttcttcggatattgtccaagtagatccacaaaatggggtattgctttccagatataaa
tgtgaacctggtgaaacagcaaagtgcatgcaaattacaaaaataggaagtgaccaagtt
ttagttgttggaaccagtagatctgctggacggtcaatgatgtcaaatggtgaagcagaa
agcagtaccaagggacgcctgattgttttaagcttggaggccgttgaaagtccacgtgag
agcagttcatttattccaacctctagttttaatccctcctcacattctggctctcctttc
catgatattattggatatacaactgaagaattttctagtaacagtctgtgcagcagtcct
gatgagttttgctgcaaccagattcaagctgaacaaatggcaggacatttgagatcattg
tctcatgccacattgagtggtgcagttcttgctgtgtacccatatctagatcgttatgtg
ttggctgctgctggtaatgcgatttatgtatttggtttcgcaaatgaaaatccccatagg
atgaaaaaatgcactgttggtagaacacggtttacaataacttgtttgaagacatttgca
tcacggattgcagttggtgattgtcgtgatggtgttctattctattcttataatgagagt
cataggaaattggaattgatctattctgatcctgctcaaagattggtgggtgatattgca
cttttaaattgtgagacagctgtggtatcagatcggcgtgggagcatatctgtattatct
tccacaagattggaaatttcagaaagtccacagaagaacttagccgtaaattgttcattt
tatatgggtgaaacagctatgagcattcagaagactgcattcaggtatcggcttccaatt
gatgatgatactgacccggtgcttgagtctgcttataattgtattgtggcaagtaccttg
ctgggaagtctctttgtcatgattccacttacaagtgaggaacatcagttgttgcaagat
gtccaagaaagactctcagtacacccattgactgcaccggtcttgggaaatgatcatgca
gagtttcgtcagcgaggtatcccgtcaggaatacctcccattcttgatggcgatatgctt
gtgcaatttttggagctcactggtgaacaacagcaagccatccttgctcatgctttgcca
gggaaagggccacgcaggcctgtctcggtcttcgaggtcttgcgaacattggagcgtgtt
cactatgcactcaactga
DBGET
integrated database retrieval system
