Panicum virgatum (switchgrass): 120659904
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Entry
120659904 CDS
T07260
Name
(RefSeq) KH domain-containing protein HEN4-like
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120659904
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120659904
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
120659904
NCBI-ProteinID:
XP_039794102
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Position
2N:complement(17773492..17781880)
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AA seq
648 aa
AA seq
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MAAAKPHFLPHAAFAKPAASSSPSAAADAEAGLAVFRLLLPPSFSDADTMRLYAAVNPLR
RRTAALQVRVEPLDPAAAGGRVVAAVLGPAAPVRRAEACSSSGEPLALSPAQEALLAVLD
ANAALYRAEQEGHRGGKGGPSRCAACLLLVDAERLQAATAGGAVLGRIALEAGACVRVVP
WEEAAPQPQGQPPEEVVEITGDRTAVRKAIVALSSCLQGDQPVDGSTTPVNKDGSMLPWA
SSEVLEPNVAIVCSEASTEFAQGSVPKADCPEGNTGQVQRKGLEQVSFRLLLPTYLAGGL
IGKKGLIIKGIEEETGACVDVGAPVTGCRERVITICALESPDSEYHIVQSALLLIFDRMM
ELESNTRSSTFEKTSQFSARALVFKNQCDCLVGLGGSIIKEMVNETGARIQILDDTDVPE
CASSFELVVQITGKLMNVRHALCLVCWKLRNHIFCSNGTDYNNGYIPSDIAESNATSQAN
IYSTIQYSMDKSHKVDHEPSVSYGMDSVEKTFSSLELSSTEIQKRDNGNTAMIDNSDNGI
QKPTEPNDIAVNNLNHGIIFPEENNFAREVQHAAITRITYETAVSGSILNLVYGDGNNLA
QLTEISGADIAVYDPPSEGNEAMIVVSGPPDQAQSAQRMLVELILQGQ
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcgaaaccccatttcctgccgcacgccgccttcgccaagcccgccgcctcc
tcctccccctccgccgccgcggatgccgaggccggactcgccgtcttccgcctcctcctc
ccgccgtccttctccgacgccgacaccatgcgcctctacgccgccgtcaacccgctgcgc
cgccgcaccgccgcgctgcaggtccgcgtcgagcccctcgaccccgccgccgcgggcggc
cgcgtcgtcgccgccgtcctcggccccgccgcccccgtccgccgcgccgaggcctgctcc
tcgtccggggagcccctcgcgctctcgcccgcgcaggaggcgctcctcgccgtgctcgac
gccaacgcggcgctctaccgcgccgagcaggaggggcaccgcggcgggaagggcggcccg
tccaggtgcgccgcgtgcctgctcctcgtcgacgccgagcggctccaggcggcgaccgcc
ggcggggccgtcctggggaggatcgccctggaggccggcgcctgcgtgcgcgtcgtgccg
tgggaggaggccgcaccgcagccgcagggccagccgcccgaggaggtcgtggagataact
ggagataggactgctgtaaggaaagctatagttgctttgtctagctgtcttcaaggtgat
caaccagttgatggctcaacaactcctgttaacaaagatggttcaatgctcccatgggca
tcttcagaagtgcttgagcctaatgtggcaatagtgtgctcagaggcatccacagagttt
gcacaaggcagtgtccctaaggctgattgtccagaaggtaatacaggacaggttcaaaga
aaaggtcttgagcaagtttcattcagacttctcttgcctacctatcttgctggaggtttg
attggtaagaagggcttgattatcaaaggtattgaagaggaaactggtgcttgtgttgat
gttggtgctcctgttactggttgcagggagcgtgtgataacaatttgtgccctagagagc
ccagactcagaatatcatatagtgcaaagtgcactgctactcatatttgacagaatgatg
gagttggaaagcaacacacgctcctccacatttgagaagacatctcaattctcggccagg
gctcttgtgttcaaaaaccaatgtgattgtttagttggtttagggggttctataatcaag
gaaatggtgaatgaaacaggagcaagaattcaaatattggatgatacagatgttcctgaa
tgtgcctcaagctttgaactagttgtgcagatcactgggaagctaatgaatgtcaggcat
gcattatgccttgtttgctggaaactgcgtaatcatattttctgctccaatggaaccgac
tacaacaatggctatattccctcagatattgctgaatcaaatgcaaccagccaggcaaat
atttattcaacaatccaatattcaatggacaaatcccataaggttgatcatgaaccttct
gtcagctatggaatggactctgtggaaaagactttcagttccttagagcttagttctaca
gaaattcagaaacgtgataacgggaatactgccatgatcgacaattcagataatgggatt
cagaaacctactgagccgaatgacattgcagtcaacaatttgaatcatggaattatattt
ccagaggaaaacaattttgcgagggaagttcagcatgctgcgataacaagaatcacatac
gaaactgctgtttctgggagcatcctaaatcttgtctatggagatggaaacaacctggcc
cagcttacagagatctctggtgcagacattgccgtctacgacccaccttctgaggggaat
gaagctatgatcgttgtttccggaccgccagatcaggcacagtccgctcagcgcatgctc
gttgagttgatcctacagggacaatga
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