KEGG   Panicum virgatum (switchgrass): 120659965
Entry
120659965         CDS       T07260                                 
Name
(RefSeq) glycine-rich RNA-binding protein 2, mitochondrial-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120659965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120659965
   03041 Spliceosome [BR:pvir03041]
    120659965
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120659965
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120659965
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120659965
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_RdRP1_2
Other DBs
NCBI-GeneID: 120659965
NCBI-ProteinID: XP_039794200
LinkDB
Position
2N:complement(19895099..19901768)
AA seq 297 aa
MAFLQKVGNLVKRSTGASSSLYQAVRCMSSSKLFIGGISYGTDEHSLRDAFASYGQVIEA
RIIMDRETGRSRGFGFVTYTSTEEAAAAITGMDGKDLQGRIVKVTYAHDRGSRLGGGGGG
GYGGGGYGGGGGYSGGGYGRGGGGYGGGSYGGSGGYGGGGYNNDGTAGSGYNTGGSYGVS
QGGQGGYGVDAGYTGGTGGYNATPSNYSGDSFNQGGGTTSAYEGGNYGQSSDTFADNASN
NAAVGKLDDLLSDLKVDGAGEAEGEVEAEDMKAEGQDDFSQDDLKDEDEPDKANKSS
NT seq 894 nt   +upstreamnt  +downstreamnt
atggcgttcctgcagaaggttggcaatcttgtcaagcggtccacgggtgccagctcgtcg
ctctaccaggcggttcgatgcatgtcctcctccaagctcttcataggaggaatctcgtat
ggcacagatgagcacagcctcagggatgcttttgcaagctatggccaagtcattgaagct
aggataataatggaccgggaaaccggaagatcgagggggtttggttttgtgacatacaca
tctacggaggaggcagctgctgccattactggcatggatgggaaggatttgcagggtcgg
atagtgaaggtgacttatgctcatgaccgtggtagccgtcttggtggaggtggcggtggt
ggatatggtggaggcggctatggcggcggtggaggatacagtggtggtggatatggaaga
ggtggtggtgggtatggtggaggttcatatggtggtagtggaggctacggtggtggcgga
tataacaacgatggtacggctggctcagggtacaacactggtggaagctatggtgtttct
caaggtgggcaaggtggttatggtgttgatgctggttacactggtggcactggtggatat
aatgctactcctagcaattacagtggcgatagcttcaatcaagggggtggcacaactagt
gcatatgaaggtgggaactatgggcaaagcagtgacacctttgcagacaacgcctccaac
aatgcggctgttggcaaactggatgacttgttaagtgatctcaaagttgacggtgctggc
gaggctgagggagaggtcgaggctgaggacatgaaagcggaaggccaagatgacttcagc
caggatgatttgaaggacgaagatgagcctgacaaggccaacaaaagtagttaa

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