Panicum virgatum (switchgrass): 120659969
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Entry
120659969 CDS
T07260
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120659969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120659969
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120659969
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120659969
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120659969
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
120659969
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
120659969
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP60 / Chaperonin
120659969
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
120659969
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120659969
Exosomal proteins of other body fluids (saliva and urine)
120659969
Exosomal proteins of breast cancer cells
120659969
Exosomal proteins of colorectal cancer cells
120659969
Exosomal proteins of bladder cancer cells
120659969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Ribosomal_L12
Motif
Other DBs
NCBI-GeneID:
120659969
NCBI-ProteinID:
XP_039794207
LinkDB
All DBs
Position
2N:20012328..20016959
Genome browser
AA seq
582 aa
AA seq
DB search
MYLTPAAAFSSSSLQLVPRPARAVPRRRLVVRADVKVISTGEACRRGLAAGIDKLTDAVA
VTLGPKGRNVVIDQDDVPKVINDGVTIAKAIELPNALEHAGASLLQEIASKTNSAVGDGT
TTAIVLAREIINLGLLAVATGANPVALRRGIDKAVHELIKILKSKCIPVSTKEDIKAVAS
ISSGNDEYVGNLIADALEKIGPDGIIKIESSSSIYTTVEVQEGMKIDKGYVSPHFITNHD
KAIIEFENARVLLTDQRVNEVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTLVLNKLNG
LLNVAVVKCPGLGDEKKAILQDIAIMTGADFFASDLGWGLHGITSDQLGMAQKITITSES
TTIIAHPSMRPEIEARIMQLKKDVEETTSSYLKERFSARIAKLSRGVGVIKVGAATEAEL
EDRKLRVEDAKNATFAAISEGITPGGGVTYVHLSKHIPSIMDLVDDPEEKMGVNIVGKAL
LVPAMTIARNAGADGSAVVEKLLASEWRVGYNAMTDKFEDLVAAGVVDPCRVARCVLQNS
ASIAGLILMTQAMMSDKIKKKKSPIPEIPGIPPLQISQKAKA
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtacctcacacccgcagccgccttttcgtcctcatccctgcagctggtgcccaggccg
gccagggccgtcccccgccgccgcctggtggtgcgggcagacgtcaaggtcatatctacc
ggcgaggcctgccgccgcgggctcgccgccggcatcgacaagctcaccgacgccgttgcg
gtcaccctcggtccgaaagggaggaatgttgttattgaccaggatgatgtccctaaagta
attaatgatggcgtcacaattgccaaggcaatagagctcccaaatgctcttgagcatgcg
ggtgcctcgctacttcaagagatagcatccaagacaaatagtgctgttggtgatggaact
acaacagctattgttttggctcgggaaatcatcaatcttgggttgttggcagttgctact
ggtgctaatccagttgccttgagaaggggtattgacaaagctgttcatgagctaatcaag
atcttgaagagtaaatgtattcctgtgagtacaaaggaggacataaaagctgttgcttca
atatcttctggcaatgatgaatatgttggcaatctcattgctgatgcattggagaagata
ggtcctgatggtataataaaaattgagtcatcatcttcaatatatactacagttgaggtg
caggaaggaatgaagatagacaagggatatgtttctccgcatttcatcacaaatcatgac
aaggcgattattgaatttgaaaatgcaagagtgctcttaactgatcagcgtgtgaatgaa
gtccaggagatacttcctttactggagaagacgacacagttgagtgtccctttattaatt
attgctgaggatgtatcacatacagtgtattcaacactggttcttaacaaactgaatgga
ttgctaaatgttgcggttgttaaatgtcctggtttgggagatgaaaagaaggctattctc
caagatatagctatcatgacaggtgcagatttctttgctagtgaccttggctggggcctt
cacggcattacttctgatcagttaggtatggctcagaagatcacaataactagtgaatca
acgaccattattgcgcatccttcaatgagaccagagattgaggccagaatcatgcaattg
aagaaagatgtagaggagacaacaagttcctatctaaaagaaaggttttctgcaagaatt
gctaaactctcacgtggtgttggagttattaaggttggggcagccactgaagctgaactc
gaggataggaagctgagagtggaggatgcaaagaatgcaacttttgctgccattagtgaa
ggcattactcctggtggtggtgtgacatatgttcatttatcaaagcatattcccagcatc
atggatcttgtggatgacccggaggagaagatgggtgtaaatatagttgggaaggcactt
cttgtacctgctatgacgatagctcgcaatgctggggcagacggttcagctgttgtagag
aagcttcttgccagtgagtggcgagttgggtacaacgcaatgactgacaagtttgaagac
cttgttgctgctggtgtggtagacccatgcagggtagccagatgtgtgctccagaactcg
gcctctatcgcaggactaattcttatgacccaagctatgatgtctgacaaaataaagaag
aaaaagtcccccatcccggagattcctggcattccaccattgcagataagccaaaaggcc
aaggcttga
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