Panicum virgatum (switchgrass): 120660099
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Entry
120660099 CDS
T07260
Name
(RefSeq) exosome complex component RRP43-like
KO
K12586
exosome complex component RRP43
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120660099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120660099
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120660099
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
120660099
NCBI-ProteinID:
XP_039794382
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Position
2N:24102867..24112379
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AA seq
308 aa
AA seq
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MAEKTEPAAAAASGLAGEMEVEAYRRLFPLAFLERHLRESVRPDARRLSEARPTTVALGA
VSSAHGSALVRLGDTAMLASVKLEVMSPPAESSDEGSVVVEFHMPPICSPLVRPGRPADV
APVISKALEDVLMSSGMLNLKELCLISGKASWLAYLDIYCLNADGSLFDAALISAVASFT
HLEIPLVSVGDDGRVFTVGGNEGKTKFELVNREKRKLTLGDIPFSLTCALHKDSILVDPT
SEEESIIETYVTVVIDSSDRIVSVQKLGGAVTSMTAVKECISLAKERRRKLREILKDSVD
VMEVDQTE
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaagaccgaaccggcggcggccgcggccagcgggctcgccggggagatggag
gtagaggcgtaccgccgcctctttccgctggccttcctggagcgccacctccgggagtcc
gtccgccccgatgcccgccgcctctccgaggcccgccccaccaccgtcgccctcggcgcc
gtctcctccgcgcatggatccgctctcgtccgccttggcgacaccgccatgctcgcgtca
gtcaagctggaggtgatgtcacccccggccgaatcctcggatgaaggatccgtcgttgtt
gagttccatatgccacccatctgctccccgttggtcagaccaggccggcctgctgacgtg
gcaccagtcatttccaaggcccttgaggacgttctcatgagttctggaatgttgaatttg
aaggagctctgtttgatcagtgggaaggcttcttggctagcatacctggatatctattgt
ttgaatgctgatgggtctctgttcgacgctgcactgatttcagcagtggcttccttcaca
catttggagattcctttagtttctgttggtgatgatggtagagtattcactgttggaggc
aatgaagggaaaaccaaatttgaattggtaaacagagaaaagaggaagcttacacttggc
gacattccattttcccttacgtgtgcacttcacaaggatagtattctagtggacccaact
tctgaagaagaatcgataatagagacttatgtgactgttgttatagattcttcagaccgc
atagtgtcagtacaaaaacttggaggtgcagtgacttccatgacagctgttaaggagtgc
attagcttggctaaggaaaggaggcggaagttaagagagattctgaaagactctgttgac
gtcatggaagttgaccaaactgaataa
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