Panicum virgatum (switchgrass): 120660115
Help
Entry
120660115 CDS
T07260
Name
(RefSeq) sister chromatid cohesion protein SCC2-like isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120660115
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
120660115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
Cnd1
INTS1_R4
zf-RING_2
DUF1672
PHD
API5
Motif
Other DBs
NCBI-GeneID:
120660115
NCBI-ProteinID:
XP_039794406
LinkDB
All DBs
Position
2K:complement(548755..562942)
Genome browser
AA seq
1762 aa
AA seq
DB search
MDPAGAGGGGRAGFERACRLPNTVHSEIAPALPLPTLPPTLGFDDLRDDEPLAAPDRPDM
IMQAANIARILAETNVSHLGFTEADNVDVDPSQCSWLWREVLKHNPDAFKVNKAPAPPPT
SQGAHEGPEYQIQNEKHFEHFTTNMNKAQKEPVFPLDDINSRREHLRNELTPDSVASKKP
KVRKKEIDNSVSSSGPSIPNSQEIIANFCEIVEDFCGRVENPDDVDGSDWLSLPLNDVKD
LVNEITSVRSKRILHEVPMGTVTRLLHVMDRQIQCSQGLSIDAKENSDAEPLVFSALESV
HAALAIMTHHDMPKQLYREELIERIIDFSRHQITDCMAASNPTFRAIHKPAENVANDGDD
DEEDGENGPVSKKRRTTANLNMRKSSNRVSASVYSAVQKLCLILGFLKELLTTVRLSDSC
ILQLAKTCFTTFLVDNMQLLQLKAIGVICTVFSSYTQHRSYLVDETIVLLRKLQFSRNAV
RTYLLADEEQKQIQMITALLVHLVQFSAIVPDSLKGTVDWSTIVDAPVDSSYPIKCHEAA
TEACCLFWTSVLERFTAAKSQDMSEARGIIDNLVQDLLTILNLPEYPAAASILEVLCVLL
LQNAGLKSKDTNARCFAIDLLGGIASRLKRDSVACSEEKLWILQELTDAGSDGSNFLKNK
CCVCLGGRGINIACDVCGRCFHSDCMGSGSQDNLQRDSVCPLCFCNQQLSVLQSYCQLQT
KENGKRTAASVSKKSSAPAEVPAVDIVQQILLSYLQEAGLQDDGNLFTRWFYLCIWNKDD
PHSEEKIIYYLARLKSKEILRDSGNCLVIPRDWAKKICLALGQKNSFSRGFDKILGLLLA
SLRENSPTIRAKALRAVSSIVEADPEVLGDKRVQSAVEGRFCDSAISVREAALELVGRHI
ASHPDVGLKYIEKVAERIKDTGLSVRKRAIKIIRDLCASNPNTDTTHAFVEIISRVNDEE
ASVRDLVCKTFYELWFEEPTGSHKHLVADGSSVPMEIAKKTEQIVDMLRKMPNHQPLITV
IKRNLCLDFLPQSTKAAGINSSMVASLRKRCELICKRLLERILQVEEGAANEMEIHALPY
IVALQAFCIVDPTLCIPVTDPSKFVVTLQPYLKIQIDNKSAAQLLESIIFVIDAVLPLIR
KPPQTVVVELEQDLKQMIVRHSYLTVVHACIKCLCTLSTSAGRGPLLLEYLVNVFYKHLS
GTNSDRQLLGRSLFCLGLLLRYGYQLMLTSENQLDFPKIINLLQRSYLLSIDFNLKVRAL
QTLGNILIAKPDFMLKKEIMNLIEATLSSGVDYRLKIQGLQNLYEYLRDAESQLTAESTG
KSPVQSTINGGSEVPVAAGAGDTNICGGIIQLYWSSILERCLDTNDQVRQSALKIVEVVL
RQGLVHPITCVPHLIALEMDPLEGNSKLAHHLLVNMHNKYPSFFESRLGDGLQMSFIFFE
TTVSNHKLAANVKSNPIAFVKPGITRIYRFIRANRNSRNKFVHSIVRKFEPDDRNRSTVS
FLVYCAEVLASLPFACPDEPLYLIYDINRVIHFRAGAIEANLKKWTSMVQPQDAVGMATL
PGESHVVMHEPGVYYNNNVGYIPERTNNNPCSTSDVDMAKVQEDCYDAIALQLLLKLKRH
LKIVYSLTDAHCQAFSLKEPPKSGETLHKQSSVPFNIGNSNISLPSCLQDVASVYQDFKT
VLHEDSMDFGVYTPSVQRKRPTPRSTSRVRRTAATSVARARGGGRGDDDDTDDDDWAGGA
RVLDFSAQASNSGRVTRQRVQV
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atggaccccgccggcgccggcggagggggccgggccggcttcgagcgggcgtgccgcctg
cccaacaccgtccactccgagatcgcgcccgcgctgccgctccccaccctcccgcccacg
ctcggcttcgacgacctccgcgacgacgagcccctcgccgcccccgaccgccccgacatg
atcatgcaggccgccaacatcgcccgcatcctcgccgagaccaacgtctcccacctgggc
ttcactgaggcggacaacgtcgacgtcgatcccagccagtgctcctggctctggagggag
gtgctcaagcacaaccccgacgccttcaaggtcaacaaggcccctgcgcccccgcctact
tcgcaaggtgcacatgaaggcccagaatatcaaattcaaaatgagaagcattttgagcat
tttacaactaatatgaacaaagcacagaaggaacctgtatttcctctggatgacatcaac
tcacgcagagagcatcttcgtaatgaactaaccccagattcagtcgcttcaaagaagcca
aaagttaggaagaaagaaattgataattctgtttcaagttctggccccagcattcctaat
agtcaagaaataatcgccaacttctgtgagattgtggaggatttctgcggaagagtcgaa
aatcctgatgatgtagatggcagcgactggttgtcattgccacttaatgatgttaaggat
cttgttaatgaaattacatcagttcgatccaaaaggatattgcatgaggttcctatgggt
acagttacaaggttattacatgtgatggaccgtcagatccaatgttctcaaggtttgtcg
atagatgcgaaggaaaattctgatgctgaacctctggttttctcggctttggagtccgtt
catgcagcgttagcaattatgacccaccatgatatgccaaagcagctgtatcgagaagaa
cttattgagcgaattattgatttctcaaggcatcagatcactgattgtatggcagcaagt
aacccaaccttccgagctatccacaaaccagctgagaatgttgcaaatgatggagatgat
gacgaagaggatggggaaaatggaccagttagcaaaaagagacgtactactgctaatcta
aacatgagaaaatcttcaaacagagtttctgcttctgtttactctgctgtgcagaaacta
tgcttgatattgggttttcttaaggaactgctcacaacagtgcgcttatcagatagttgt
attctgcagttagcaaaaacctgctttactacattcttggtggacaatatgcagctacta
caattgaaagcaattggggttatttgcacggttttttcatcatacacacaacacaggagt
tacttggttgatgaaacaattgtccttctccgtaagttgcagttttcaagaaatgctgtt
agaacctaccttctggcagacgaagaacaaaagcaaatccagatgataacagcactgtta
gttcacctggttcagtttagtgccattgttcctgatagcttaaagggaacagttgactgg
agcactattgtcgatgccccagttgattctagttatccaattaaatgccatgaagcggca
acagaggcttgttgccttttctggactagtgtcctcgaacgttttactgcagctaaatct
caagatatgtcagaagccagaggaataatagataatcttgttcaggatttgctaacaata
ctaaacttgccggagtatccagctgctgcttctattcttgaggttctctgtgtattgctg
cttcaaaatgctggattgaaatctaaggacactaatgctcggtgctttgctattgaccta
cttggtggtattgcatcgagattgaagcgtgattctgtcgcctgtagtgaggagaagctt
tggatattgcaagagctcactgatgcaggtagtgatggctcaaattttttgaaaaacaaa
tgttgtgtttgtcttggtggaagaggtataaatatagcctgtgatgtatgtggaagatgt
ttccattcagactgtatggggtctggtagtcaggataatttacaacgtgacagtgtctgc
cccttatgtttttgcaatcaacaactcagtgtgttacagtcatactgccagttacaaact
aaagagaacggcaaaagaactgctgcctcggttagtaagaaatcttctgcaccagctgag
gtgccagcagtggatattgtgcaacagatactactgagttatctccaggaagctggtcta
caagatgatgggaacctgtttactcgatggttctatctatgtatctggaacaaagatgac
ccccattctgaagagaagattatctactatcttgctagattgaaatctaaggagattctg
cgtgattctggcaattgtttggtaattcccagagattgggcaaagaaaatttgcttggca
cttggccagaagaattcattttcaaggggttttgataaaattcttgggcttcttttggct
agcttgagagaaaattctcctacaataagggcaaaggctttacgtgcagtcagcagtata
gttgaagctgaccctgaggtcttgggtgacaaacgtgtccagtctgctgttgaagggagg
ttttgtgattcagctatttctgttcgtgaagctgcccttgagcttgttggaaggcatatt
gcttcacatcctgatgtgggcctaaagtatatcgaaaaagttgccgagcgaataaaggac
acaggactaagcgttcggaaacgtgcaattaaaattataagggatctttgtgcttcaaat
ccaaacacggacacaacacatgcctttgtggagattatttctcgtgttaatgatgaggag
gccagtgtacgggatcttgtatgtaaaacattttatgagctatggtttgaagaaccaact
gggagtcataagcacttggttgctgatggtagttcagtaccaatggagattgctaaaaag
accgagcaaattgttgatatgctgaggaagatgcccaatcaccaaccccttattactgtt
ataaaacgtaacttgtgtcttgatttcctccctcagtcaaccaaggctgcaggcattaac
tcgtccatggtggcatcacttcggaagcgttgtgaattgatatgcaagcgcttgttagaa
agaatattgcaggttgaggaaggagctgctaatgagatggaaatccatgctcttccttat
attgttgccctgcaagcattttgtattgttgatcccaccctctgcattccagtaactgat
ccttccaagtttgttgtgacgctacaaccataccttaagattcagatcgacaataaatca
gctgcccagttgcttgaaagtataatattcgtgattgatgctgttcttccactcataagg
aagccaccacaaactgtggttgtagaacttgagcaggatctgaagcagatgatagttcgc
cattcctatttgacagttgtacatgcatgtatcaagtgcctttgtacccttagcacatca
gctggtagaggtccactattactggaataccttgttaatgttttctacaagcatctgtct
ggcactaattccgatcgtcagctattaggtcgatccctgttttgtcttggactgctcctt
cggtatggttatcaattgatgttgacatctgaaaatcagcttgattttccaaagattatc
aatttgctccagagaagctatcttctcagtattgatttcaacttgaaggttcgagctttg
cagactttgggaaacatacttatcgcgaagcccgattttatgctaaaaaaggaaatcatg
aatctcatagaggcaacactatcttctggcgtcgattataggttaaagattcaaggactt
caaaacctctatgagtatctccgagatgctgaaagccaacttactgctgagagtactggg
aagtctcctgtacaatctacaataaatggtggaagtgaagttcctgttgctgctggtgct
ggagacaccaacatatgtggtggtattatccaattgtattggagttctattcttgaaagg
tgcttggatacgaatgaccaagttcgccagagtgcgcttaagattgttgaagttgtactt
cgccagggtttagttcaccctattacctgtgttccgcaccttattgcacttgaaatggac
ccactggaggggaactcgaagttggctcatcatctactagtgaatatgcataacaagtat
ccttcattttttgaaagccgcttaggtgatggcctacaaatgtcatttatattcttcgag
accacagtcagcaaccataaacttgcagcaaacgtcaaatcaaatccgattgcatttgtc
aaacctggcataactagaatataccgttttatccgggcaaatcgaaattcaagaaacaaa
tttgtccactcaatagttcggaaattcgagcccgatgaccggaaccgctccacagttagc
tttcttgtatactgtgccgaagttcttgcctcactgccattcgcatgccctgatgaacca
ctctatttgatatatgatataaatcgagttattcactttagagcaggagcaattgaggcc
aatttgaaaaaatggacttctatggttcaacctcaagatgcagtgggtatggcaacattg
ccaggagagagtcatgttgtcatgcatgagcctggagtatattacaacaataatgtggga
tatattcctgaaaggacgaataacaatccttgcagtacatcagatgtagatatggccaaa
gttcaggaggattgctatgacgcaatagccctccaactcctcctcaaattgaagagacat
ttgaaaattgtttatagtctaactgatgcccactgtcaggcattttctctaaaggaacca
ccaaaatctggagaaacactccacaagcagagtagtgttccttttaacattggaaacagt
aacatcagtctgccgagctgcctgcaggatgtagcttctgtgtaccaggatttcaagacg
gtgttgcacgaagattccatggacttcggtgtgtacaccccttctgtgcagaggaagcgc
ccaaccccaagaagtacgtcgagagtaaggaggacagctgccacaagtgttgcaagagcc
cgtggtggtggccgtggtgatgatgatgatactgatgacgatgactgggccgggggggca
agagtgctggacttcagcgctcaggcgagcaatagtggtcgtgtaacaaggcaaagggtc
caagtatga
DBGET
integrated database retrieval system
