Panicum virgatum (switchgrass): 120660125
Help
Entry
120660125 CDS
T07260
Name
(RefSeq) indole-3-glycerol phosphate synthase-like
KO
K01609
indole-3-glycerol phosphate synthase [EC:
4.1.1.48
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00400
Phenylalanine, tyrosine and tryptophan biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01230
Biosynthesis of amino acids
Module
pvir_M00023
Tryptophan biosynthesis, chorismate => tryptophan
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09105 Amino acid metabolism
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
120660125
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.48 indole-3-glycerol-phosphate synthase
120660125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IGPS
NanE
ThiG
Motif
Other DBs
NCBI-GeneID:
120660125
NCBI-ProteinID:
XP_039794411
LinkDB
All DBs
Position
2N:complement(25774906..25777832)
Genome browser
AA seq
384 aa
AA seq
DB search
MESYILAAASVVRASVPATVFSPLSSSSRPVVFRTDVAGPSPAARAVRCGAAEGSVLHRL
EDEMFNSLEVIQWESGKSINSIAAAQGIRIRRRCRPRYPSEGVGADRAVPRNVLEQIIWD
KEVEVSQRKAKAPLQKVMESAERAPPPRDFVGALDAARRRNGLPALIAEVKKASPIKGLL
REHFNPVEIAHAYEKNGAACLSILTDEKHFLGSFENLETVRNSGVNCPLLCKEFVIDVWQ
IYYARSKGADAVLLIAAVLPDLDIKYMLRVCRSLGMTALVEVHDERELDRVLKIDGVEII
GINNRSLGTFEVDTANTDMLLRKRGHVIRKKGIKVVSESGLFTPEDVAYVQNAGVSAVLV
GESLVTQEDPGRAIAGLFGKELLH
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggagtcctacatcctcgccgccgcgtcggtcgtcagggcctctgttcctgcaactgta
ttctcgccgctctcctcgtcctctcggcccgtcgtcttccgcaccgacgtcgccgggccc
agccccgccgcgcgcgcagtccgctgcggcgccgccgagggctcggtcctgcacaggctg
gaagacgagatgttcaactcgttggaggtgatccagtgggagagcggcaagtccatcaac
tccatcgccgccgcgcagggcatccgcatccgccgccgctgccgccccaggtacccgtcc
gagggcgtcggcgccgacagggccgtcccgcgcaacgtcctggagcagatcatctgggac
aaggaggtcgaggtgtcccagaggaaggccaaggcgccgctccagaaggtgatggagtcc
gccgagcgcgcgccgccgcctagggacttcgtcggggcgctggacgccgcgcgccgccgc
aacggcctccccgcgctcatcgccgaggtcaagaaggcgtcgcccatcaagggcctgctc
agggagcacttcaatccggtcgagatcgctcacgcctacgagaagaacggcgcagcctgc
ttgagcatcctgaccgacgagaagcactttctggggagctttgagaatctggagaccgtg
cgcaattccggtgtgaattgccctctgctctgcaaggagttcgtcatcgacgtctggcaa
atctactacgcgcgctccaagggcgctgatgcggtgctcctgatcgccgccgtgctacca
gacctcgacatcaagtacatgcttcgtgtgtgcaggagcctcgggatgacggctctcgtc
gaggttcacgatgagagggagttggatcgtgtactcaagatagacggtgttgaaattatt
ggcatcaacaaccgcagtctaggaacatttgaagtcgatactgccaacacagacatgttg
ctacgtaaacgtggccacgtcatcaggaagaagggaataaaggttgtgagcgagtcaggg
ttgtttacgcccgaagatgtagcatatgtgcagaatgctggtgtttccgctgttttagta
ggagaatccctagtgacgcaggaagatcctggtcgagcaatcgctgggctgtttgggaag
gagctcttacactaa
DBGET
integrated database retrieval system
