KEGG   Panicum virgatum (switchgrass): 120660475
Entry
120660475         CDS       T07260                                 
Name
(RefSeq) THO complex subunit 6-like
  KO
K13175  THO complex subunit 6
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120660475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120660475
   03041 Spliceosome [BR:pvir03041]
    120660475
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     120660475
Spliceosome [BR:pvir03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    120660475
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_RIG_2nd Hira NBCH_WD40 v110 Beta-prop_SPT8 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 120660475
NCBI-ProteinID: XP_039794954
LinkDB
Position
2N:complement(40655933..40659816)
AA seq 381 aa
MATAAAQALPASMDAREWDEASYRRGILRARDFSSRTLFRAVFFDHGDDLDSDVLLAAAS
SDGSLASFSLSSCISAASASSQAEAAVTLVDPVCIVQAHSGPAYDVRFYPDPQQPLLFSC
GDDGRIRGWRWHEMQSCLAPLSLQGDHLEPVLDLVNPQHEGPWGARSPIPENNAIAINKQ
DASIFAAAGDACAYCWDVETGKCKMTFKGHTDYLHSVAIRESNRQVVSGSEDGTARIWDC
RSGKCTQVVHPVKKIAFENSWVSCVAIDASESWLACGTSSGISVWSLLSNECIFNLDCHA
PVQDLLFDKNQILAVGAEPVLSRFTINGTVLSQIKCAPQSAFSISIHSSGMAAVAGYGGL
VDVISELGSHLCTFGSRGLDK
NT seq 1146 nt   +upstreamnt  +downstreamnt
atggcgacggcggcggcgcaggcgctcccggcatcgatggacgcgcgcgagtgggacgag
gcatcgtaccgccgtggcatcctacgtgctcgcgacttctcgtcgcgcaccctcttccgc
gccgtcttcttcgaccacggcgacgacttggactccgacgtcctcctcgccgccgcctcc
agcgatggctccctcgcctccttctccctttcatcctgcatatccgccgcttccgcatcc
tcccaggcggaggccgccgtcacgctggttgatcccgtctgcattgtgcaggcgcacagc
ggccctgcctacgatgtcaggttctatcccgatccgcagcaaccgctgctcttcagctgt
ggggatgacggacgcatccgtggctggagatggcacgagatgcagagctgccttgccccg
ctgtctctgcaaggagatcatctagaaccagtacttgacttggtcaaccctcagcatgag
ggtccttggggtgctcgctctccaatacctgaaaacaatgccattgcaattaataaacag
gatgcatccatttttgcagcagcgggtgatgcgtgtgcttactgctgggatgtggagact
ggtaaatgtaaaatgacattcaaggggcatactgactatttgcacagtgttgcaattcgc
gagtcaaaccgccaggtggtatcaggatcagaggatggaacagcccgtatatgggattgc
agaagtgggaagtgtactcaggttgtacatccagtaaagaagatagcatttgaaaactca
tgggtcagttgtgttgccattgatgcaagtgaaagttggctggcttgtggcacatctagt
ggtatatcagtttggagtcttctctcaaatgagtgcatctttaatttggattgccatgcc
cctgttcaagacttactgtttgataagaaccaaattttggcagttggtgctgaacctgtg
ctctcccgtttcacaataaatgggaccgttctttcgcagataaaatgtgctcctcagtcg
gcattctccatctccatccattcatctgggatggcagctgttgctggatacggaggcctg
gtggatgtgatctcggaacttgggagccatctgtgcacattcggtagcaggggccttgac
aagtaa

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