Panicum virgatum (switchgrass): 120660479
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Entry
120660479 CDS
T07260
Name
(RefSeq) zinc finger CCCH domain-containing protein 59-like
KO
K24939
CWF19-like protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120660479
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120660479
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CwfJ_C_1
CwfJ_C_2
zf_CCCH_4
zf-CCCH
zf-CCCH_4
Torus
zf-CCCH_10
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
120660479
NCBI-ProteinID:
XP_039794957
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Position
2N:40718686..40722958
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AA seq
605 aa
AA seq
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MAATPPAPAPPRILLAGDAHGRLHQLFKRVKSVNQSTGPFHALLCVGQFFSPEADAEGAP
GDVADYLEGRAAVPIPTYFTGDYGPTAPRLLSKAAAGARGFAPGGIDTCPNLFWLRGSNR
FTLHGLSVVYLSGKKGPGGPGCYSQDDVDALRALAEEPGIVDLFLTNEWPTGVVNGADTS
NVPNQVFDPHGYDPVVAELVAEIKPRYHIAGTKGVFYSREPYVNNSAAHVTRFIGLANVG
NKEKQKFIHAISPTPASTMSSADIHAKPPNSTLSPYAAPAQSVPIEEAPKRPADNTDAQY
WRYDVKRQRQGEAEGGRLCFKFTSSGSCPRGSKCNFRHDEEAVEHYQRNVCFDFLNKGKC
ERGPECKFAHSLSGDTSIRDSRPRRRAESSCWFCLSSPDVESHLVISIGEAYYCALAKGP
LVPNHVLMIPVEHCPSTLLMPLEAEVELGRYKNALVKYFEKQGKTAVFFEWVSQNSRHAN
LQAVPVPFPKADAVNKIFHLAAKKLGFEFSMVNPDGGAKVARESLISHSESKSSLFYVEL
PEGKILLHNIDSNEKFPAQFGREVLAGLLSMPDRADWRNCKLSKEEEIQMVDDFKHGFGE
FDPAE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccccgccggccccggcgccgccgcgcatcctcctcgccggtgacgcccac
ggccgcctccaccagctcttcaagcgcgttaaatcggtgaaccagtcgacggggccgttc
cacgcactgctctgcgtggggcagttcttctcccccgaagctgacgccgagggggcgccg
ggggacgtcgcggactacctggaggggcgcgccgccgtgcccatcccgacctacttcacc
ggcgactacggcccgacggcgccgcggctgctgtcgaaggccgccgctggcgctcgcggg
ttcgcaccgggcggcatcgacacatgccccaacctcttctggctcaggggcagcaaccgt
ttcaccctccatggtttgtcggtggtttatttgtcggggaagaagggaccaggagggcct
ggctgctacagccaggatgatgtcgatgccctgcgggctcttgcagaagagccaggaatc
gttgatctgttcttgactaacgaatggccaactggagtggtgaacggggctgacacttct
aatgtgcctaatcaggtttttgatcctcatgggtatgatcctgttgttgctgaattggtt
gccgagattaagccaagatatcatattgctggcaccaaaggtgtcttttattcaagggaa
ccctatgtcaataattctgctgcacatgttacccgctttattggacttgctaatgttgga
aacaaagaaaagcagaaatttattcatgcgatttctcctactccagcatctaccatgtcc
agtgctgatatccatgccaagcctccaaattctactttatcaccttatgctgctccagca
caatctgtccctattgaagaagctccaaaacgtccagctgacaacactgatgcacaatat
tggcgttatgatgtcaagcggcaaaggcaaggggaagctgagggaggtagattgtgtttc
aaatttacatcctcagggtcctgtccacgagggagtaaatgcaactttagacatgatgag
gaggcagtggagcattaccagagaaatgtctgttttgattttctaaacaaaggaaaatgc
gagaggggcccggagtgtaagtttgctcacagcctatcaggggacacttctataagagat
tcaagacctcgtaggcgtgcggagagcagttgctggttctgcttgtcgagtccagatgtt
gagtcacatcttgtcattagtataggagaagcttactactgcgcacttgcaaaggggcca
cttgttccaaatcatgttctgatgatacctgttgaacactgccccagtacattattgatg
cccttggaagcagaggtagaacttgggaggtataaaaatgctctggttaagtactttgag
aagcaaggaaagacagcagtattctttgagtgggtttcacagaactcccgccatgcaaac
cttcaggctgttccggtaccgtttcctaaagcagatgcagttaataagatatttcatcta
gcagcaaaaaaactgggatttgaattctctatggtgaatccagatggtggtgcaaaagta
gctagagaatcattgatatctcactctgaaagcaaatcaagcctgttttatgttgagctc
ccggaaggcaaaatactcttgcataacattgacagtaatgagaaattccctgcccagttt
ggacgtgaggttttagcaggattgctaagcatgccggatcgtgcagattggagaaactgc
aagctttcgaaggaagaagagattcagatggtggatgatttcaaacatggtttcggcgag
tttgatcccgctgagtga
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