Panicum virgatum (switchgrass): 120660623
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Entry
120660623 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein MSH6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120660623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120660623
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120660623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
LBR_tudor
53-BP1_Tudor
GP41
Motif
Other DBs
NCBI-GeneID:
120660623
NCBI-ProteinID:
XP_039795152
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Position
2N:44316692..44325404
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AA seq
1344 aa
AA seq
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MASRRASNGRSPLVRKQSQITAFFSSSSTPSPSPSTPNKGASKPSPSPLNPSAARRSTLA
AASLSPPKQPPPAAAQDEKRAKRDKKDRDAAAPVAAAAAAEVVGRRLRVYWPLDDAWYEG
RVDAYDAGSRKHRVKYDDGEEEQVDLGKERFEWAATGEESTPLPARKLRRLRRMSDTAVA
KSPGLAEDGGRDSTEDEDWKRDTVADDDSEEVELEDEEEVVAVRSRKGKTRHSLPVSGST
PSTLGSGLTSASGSTISKMKKVDVASLDCAKKFSFETVNTTGKVDPEVPLSCGRKEQATG
NANTALTGEAAERFGQRDVEKFKFLGEGRKDAKGRRPGSPGYDPRTLLLPSQFLKSLTGG
QRQWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKDLDLQYMKGEQPHCGFPEKNLSVN
LEKLAKKGYRVLVVEQTETPEQFELRRKAMGIKDKVCFDSVVSVKVISCVEATSKCDIPK
FSAKLFGMLYSRKVVRREICAMVTKGTLTEGEHLLANPDPSYLLSVTESLQQSSNKSQYT
CIIGVCIVDVSTSKFIVGQFQDDPERHGLCSILSEMRPVEIIKPGKMLSPETEKALKNNT
REPLINELLPSTEFWDAEKTINEIKKYYSSADKQNNVDNVQDSLESLPNLLSELIGAGDK
TYALSALGGSLFYLRQTLLDEKIVPCAEFEPLACSGIINNIRKHMILDSAALENLELLEN
IRTGGVSGTLYAQLNHCVTGFGKRLLKRWIARPLYDCRAILQRQRAIATFKGVGNNYAAQ
FRKDLCRLPDMERLLARLFSRCDGNKRSSSIVLYEDASKRLLQQFTAALRGCEQMFHACS
LISTLICTEDSVDSQLNDLLSPGKGLPNVSYILDRFRDAFDWSEADRNGRIIPLQGCDPE
YDATCNAIQEIESSLKEYLKEQRKLLRCASVTYVNVGKDMYLIEVPESLGGSVPGNYQLQ
STKKGSYRYWTPELKELISELSKAEAEKESKLKGILQNLIQLFVEHHSEWRQLVSVVAEL
DVLISLAIASNYFEGPSCCPTIKESNGSDDTPTFHARNLGHPILRSDSLGKGSFVPNDVK
IGGPGNSSFIVLTGPNMGGKSTLLRQVCLTIILAQIGADVPAENLELSLVDRIFVRMGAR
DHIMAGQSTFLVELMETASVLSSATKNSFVALDELGRGTSTSDGQAIAASVLDYLVHQVQ
CLGLFSTHYHRLAVEHKDTKVSLCHMACEVGKGEGGLEEVTFLYRLTAGACPKSYGVNVA
RLAGIPASVLLRANEKSIDFEANYGKRCCVTKDKHASSQHEDEFSAIRDVLRIVKAWPHP
GDQAASIRMLHEAQKLAKVLAVEG
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgccgagccagcaacggccgctcgccgctcgtgcggaagcagagccagatc
accgccttcttctcctcctcgtccacaccctcaccctccccgtccacgccgaacaaaggc
gcgtccaagccctcgccgtcgccgctgaatcccagtgcagcgcggaggtccacgctcgcc
gcggcctccctttcccctcccaagcagccgccgccggcggcggcgcaggatgagaagagg
gcgaagagggataaaaaggatcgggatgctgctgccccggtcgctgcggctgcggctgcg
gaggtggtgggtaggcggctgcgggtgtactggccgctggacgacgcgtggtacgagggg
agggtggatgcctacgacgcgggctcccgcaagcaccgggtcaagtacgacgacggcgag
gaggagcaggtcgacctcgggaaggagcggttcgagtgggctgccacgggtgaggagtcc
accccgctgccggcaaggaagctgcggcgtctccggcggatgtcggataccgcggtggcg
aaatcgccgggtctggcggaggatggtggaagggattccactgaggacgaggactggaag
agggatactgtagcggatgatgattcggaggaggtggaactggaggacgaggaggaggtt
gttgcggtgaggtcacggaaggggaagacgaggcactccttgccggtgtcaggttcaacg
ccatcgacattgggctctggcttgacatcagcatcggggtcaacaatttcgaagatgaaa
aaggtggatgtggcttcattggattgtgctaagaagttcagctttgaaacagttaatacc
actggaaaagttgacccagaagtgccgctgagctgtggccggaaggagcaagctacaggg
aatgctaacactgctcttactggggaggcagctgagcgctttggacagcgcgatgtggaa
aagttcaaattccttggagaagggcgcaaagatgcaaaaggaagacgccctggaagccca
ggctacgatccaagaacacttttattgccttcccagttcttgaagagtttgacaggagga
cagagacaatggtgggaatttaaatcacaacacatggataaggttctgttcttcaagatg
ggcaaattctatgaactatttgagatggatgcacatgttggggcaaaggaccttgatctt
cagtacatgaagggtgaacaacctcactgtggattcccagagaagaatttatcagtgaat
ttagagaaattagctaagaagggctatcgagttctggttgtggagcaaactgaaacacct
gagcaatttgaacttcggcgtaaggcaatgggtataaaggacaaggtatgcttcgattcc
gtggtgtcagtcaaagtcatctcttgtgttgaggcaacttccaaatgtgatataccaaag
ttttctgctaaattatttggcatgctttactctcggaaggttgtcaggcgtgaaatatgt
gcaatggtcacaaaagggacactgacagaaggagagcacctattggcaaacccagatcca
tcatatctcctgtctgtgactgaaagtctccaacaaagttcaaacaagagtcaatacact
tgtatcattggtgtttgcatagttgatgtttcgacaagcaaatttattgtaggacagttc
caagacgacccagagcgccatggattatgttcaattttgtctgaaatgaggcctgtggaa
atcatcaagcctggtaaaatgctgagtccagaaactgagaaggcattaaagaacaacaca
agagaacctttaataaatgagttgcttccatccacggaattctgggatgcagaaaagact
attaatgagataaagaagtactacagctcagcagataaacaaaacaatgtcgacaatgta
caagacagtctggagtctctgcctaacttattaagcgaattaattggagcaggtgataaa
acatatgcgctttctgctctaggaggttccttattttatttaagacaaacccttctggat
gagaaaatagttccgtgtgctgagtttgagccccttgcatgctcggggatcatcaacaat
atccgaaagcatatgatacttgattcagcagcgctcgaaaatctggaacttttagaaaat
atcagaactggtggcgtgtcagggaccctgtatgcacaattgaaccattgtgttactggt
tttggaaagaggctgcttaaacgttggattgcaaggccattgtatgattgcagagcaata
ctacaacgtcaaagagctattgctactttcaagggagttggtaacaactatgctgcccag
tttcgtaaggatttgtgtaggctccctgacatggaacgcttgcttgcacgtcttttctct
agatgtgacggaaacaaaagaagttcatcaattgttctttatgaagatgcatcaaagaga
ctgcttcaacagtttactgcagctcttcgtggttgcgagcagatgttccatgcatgttct
ttgattagtacattgatatgcacagaagattctgtggattctcaactaaatgatttgctc
tcaccaggcaaagggctaccgaatgtatcatatattttggaccgattcagagatgcattt
gattggtcagaagcagatcgcaacggtcggatcattcctcttcaaggttgtgatcctgaa
tatgatgccacttgcaatgcaatacaggaaattgaatccagtctaaaagaatacctgaag
gagcaacggaaacttttgagatgtgcatcggttacctatgttaatgttggaaaagatatg
tacctaattgaagtgcctgagagcttgggaggttctgttccagggaattatcagttgcag
tctacaaaaaaaggttcctataggtactggacgccagaactgaaagaactaatatcagaa
ctttcaaaagctgaggcagagaaagaatcaaaattgaaaggcattcttcagaatctgatt
cagctatttgtggagcatcacagcgagtggaggcaactggtttctgttgttgctgagctt
gatgttttaataagtcttgctattgcaagtaattattttgagggaccaagttgctgtcca
actatcaaagaatcaaatggctcagatgatactcctactttccatgccagaaatcttgga
catcccattctacgaagtgattccttgggcaagggttcttttgtacccaatgatgttaag
ataggtgggccagggaattccagctttattgttcttactggtccaaatatgggtggtaaa
tcaactcttttgcgccaagtttgtcttaccattatattggctcagattggagcagatgtt
cctgcagaaaaccttgaactttctcttgttgaccgaatctttgttcgaatgggagcaagg
gatcatattatggccggccaaagtacattcttggtggagctcatggaaactgcctcggtg
ctttcatcagctaccaagaactcttttgtggctttagatgagcttgggcggggtacatca
acttctgatggacaagctatcgcggcctctgttctggattatctagtccatcaggtgcag
tgtctaggcttgttttctacacactaccataggttagcagtggaacacaaggataccaag
gtatcgctgtgtcatatggcatgcgaggtaggcaagggtgaaggaggtctggaagaagtg
actttcctttatagattaacagctggtgcatgccccaaaagctacggtgtaaatgttgct
cgattggcaggaatacctgcttcggtgcttctaagggcaaacgagaagtcaattgacttt
gaggccaactacgggaagcgatgctgtgttaccaaagataagcatgccagttcacagcac
gaagatgagttttctgccatcagggatgtgttacgcattgtgaaggcatggcctcatcct
ggtgatcaggcagcgagtataagaatgctccatgaagcgcagaagcttgccaaggtgctg
gctgtggaaggttaa
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