Panicum virgatum (switchgrass): 120660627
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Entry
120660627 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 2-like isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120660627
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120660627
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120660627
03036 Chromosome and associated proteins [BR:
pvir03036
]
120660627
Peptidases and inhibitors [BR:
pvir01002
]
Metallo peptidases
Family M1
120660627
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120660627
Coactivators
SAGA/TFTC/STAGA complex
120660627
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120660627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
120660627
NCBI-ProteinID:
XP_039795159
LinkDB
All DBs
Position
2N:44388574..44404783
Genome browser
AA seq
1375 aa
AA seq
DB search
MAKARKQKGDGGGAGGGATVLHQKLCVSIDVENQLIYGYTEIKVLLADNDTFALHADNMT
IRSILVDGETAEFDYSPHWKNEGDQPNWSLISCLKTAADAACSTYTSALNREAVPNLIVS
YERSVKSITEQQLEENSEKHEENSGRLEEHGLKPDQIVNGCNGSAMEEQKEKENGNGKGK
ENGIETETEKVKNIKLVHIDYILEKAETGIHFVGNVLYSSSQIRRAHCWFPCIDSTTQRC
PFDLEFTVSMDLIAVSNGDLLYQVLSKEDPTKKTYVYKLNTPVSAHWISLVVGPLEVLPD
SNDISVSHICLSPALSKLRNTITFFHDAYSCYEDYLATPFPLGLYKQIFLPPEMTVLPTS
LGASTCIFSSDILHDEKVIDQIIGTRIKLAYALAKQWFGIYTSAEEPNDEWLLDGLAGFL
TEIFIKLFLGNNEARYRRFKANITVCESDVSGATALSSPAASSDLYGTQTIGSYGKVRSL
KAVAVLQMLEKQMGPDSFRKILQLIVTPNRASRTLSTKEFRHLANKVGNLERPFLKEFFP
RWVESCGCPVMRLGISYSKKRNMIELAVSRGCTAKATPDSDSHTNGDTREGDAGWPGMMS
VRVHETDGAYDHPVLPMAGEALQVVEIQCHSKLAAKRVWKSKKSTKFDGSDDNIDVSTQE
NRTSIDSPLQWIRVDPEMEYLAAIHFHQPVQMWINQLEKDKDVISQSQAISVLEKLPQLS
SAVINALNNFLNDTKAFWRVRVEAAYALAVTASEATDLAGLLHLVKFYKSRRFDADIGMP
RPNDFHDIPEYFVLEAIPHAVALVRSSDKNSPRGAIEFILQLLKYNDNNGNIYSDVYWLS
AMVQAIGELELGQQGMGFLSSLLKRIDRLLQFDNFMPGYNGVLTVSCIRTLARIARRVSS
SICLDRISELISPFRNMDKPWKVRIEASKVLIDLELHHKGLDAALLLFLKYVDEEKSLRG
ATKLAVHVLRLCQASTVPHFNDQISLTTLIGLLHLLAGAKAYNNVFLRHHVFCILQVAAG
RSPTLFGVPKVVEPPLVVQDICSDHHTKADSSIPQPSRPQEPSTSTPSVREVLPTSGPTK
DADNISNCSERRNVVKIRVKLTASSSKASDADHRVHSHGGRNENEAGPCSSMSVDAPMVE
AATEPLNVSNHNIEEQNSCHDRESRMSASIGNAKLIDRHEISKELQCTADSRLDVLPKDQ
FSPAVNPLGVVDKPGSQLEVVSTSYDGNQAPESVNGVETKEKKKKDKKDKKRKRDEKRDK
KDDPEYLEKKRLKKEKKKMEKESARKQLEGEGKATPEQQKIVKPSGLQEVLPARPPTAPV
RSAEPAPSQSAEPAVVRSSEPQISSKEATVDTARTAAKPRIKIKVKPLIRKPEES
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggcgaggaagcaaaagggtgatggtggcggtgcaggtggaggcgccaccgtg
ctccaccagaagctctgcgtctccatcgacgtggagaaccagctgatctacgggtacacc
gagataaaagttcttctagccgataacgacacatttgctctacatgctgataatatgaca
atcaggagtattcttgtggatggtgaaactgctgagtttgactattcccctcattggaaa
aatgaaggtgatcaaccaaattggtctttaatatcatgtttgaagactgctgctgatgca
gcatgctcaacatatacttcggctttaaatcgagaagctgtaccaaatcttattgtatca
tatgagagatcagttaagtcgataactgagcaacagttagaagaaaacagtgaaaagcat
gaagaaaatagtggaaggcttgaagaacatggtttgaagcctgatcaaattgttaatggc
tgcaatggttctgcaatggaagagcaaaaggaaaaggaaaacggaaatgggaagggcaag
gaaaacggaattgaaactgaaactgaaaaggtgaagaacataaagctggttcacatagat
tatattttggagaaggctgaaactggcatccacttcgtcggcaatgttctgtatagcagc
agtcagataagacgggcacattgttggtttccttgcattgatagcactacacaacgctgt
ccatttgacctagagtttacagttagcatggatttaattgctgtcagcaatggtgactta
ctttaccaggtcttaagcaaggaagatcctacaaaaaaaacttatgtgtataagttgaac
actccagttagtgcacattggatatccttggttgttgggccacttgaagttcttcctgac
agcaatgacataagtgtctcacacatatgtttatcccctgctttgtcaaagcttcggaat
acaatcacatttttccacgatgcatacagctgttatgaagactatcttgctacaccattt
cccttaggtttgtacaagcagatttttctccctcctgaaatgacagtgttaccaacaagc
ttaggagcctccacatgcatattcagttcagatatcttgcatgatgagaaggttatagat
cagataattggcacaagaatcaaactagcttatgcccttgcaaagcaatggtttggaata
tacacaagtgcagaggagcccaatgacgaatggctattggatggtttggctggttttctt
actgagatatttatcaagcttttccttgggaataatgaggcacggtataggcgcttcaag
gctaacatcaccgtttgtgagtctgatgttagtggtgcaactgctttgagctctcctgct
gcttcaagtgatctatatggaactcaaacaattggttcatatgggaaagttcgttcattg
aaggcagtagctgttcttcaaatgttggagaagcagatggggccagactcctttcggaag
attttgcagttgatagtgaccccaaatcgtgcctcgagaacacttagtacgaaagagttc
agacatcttgcaaataaggttggtaacctcgaacgcccattcctaaaggaattctttcca
cggtgggtcgagtcttgtggatgtccggttatgagattgggtatctcatatagcaaaaaa
cggaatatgattgaattagccgtttcaaggggttgcaccgcaaaagctacacctgattct
gatagtcataccaatggtgacactcgagaaggtgatgctggatggccaggaatgatgagt
gtacgggttcatgaaactgatggggcatacgatcatccagttctcccaatggctggtgaa
gctttgcaggtggttgaaatacagtgccattccaaactagcagctaagcgtgtttggaaa
tcgaaaaaaagcaccaaatttgatggttctgacgacaacatagatgtctctactcaagag
aaccgcacaagcatcgattcgcctttacaatggattagagtagacccagaaatggaatat
cttgctgcgatccattttcaccagcccgttcagatgtggatcaatcaattggagaaagac
aaagatgttatatcacaatcacaggcaatatctgtcctggagaaattacctcagctttct
tctgctgtgattaatgccctcaataatttcctaaatgacacaaaggccttctggagagtt
agagttgaagcggcatatgcattagcagttacagcatctgaggcaactgatttagctggg
ttgcttcatctggttaagttttataaaagccgccgctttgatgcagatattggaatgccc
aggccgaacgacttccatgatatcccagagtactttgttcttgaggcgatcccccatgcg
gtagctcttgttagatcatcagacaagaatagcccaaggggtgccattgagtttattctt
cagctcctgaagtacaatgataacaacggaaatatttactctgatgtgtactggctatct
gcaatggtacaggcaataggcgaactggaattaggccaacagggcatgggcttcctatcc
tctctactcaagcgaattgatcgtctcttgcaatttgacaactttatgcctggttacaat
ggggtcttgactgtcagctgcattcgtacccttgcacgaatagcaaggagggtgtcatct
tccatatgccttgatcgcatttctgaactaatttccccctttcgcaacatggacaaacca
tggaaagttcgaattgaagctagcaaggttcttattgatcttgaattgcaccataaaggc
cttgatgcagctcttttattgttcttgaaatatgtggatgaagaaaagtctttgcgagga
gcgacgaagttggctgttcatgtcttgcgtttatgtcaagcaagtactgttccccacttt
aatgatcaaataagtttgacaactctaattggtcttcttcacctgcttgctggtgcaaaa
gcatacaataatgtatttcttcgtcatcatgtgttctgcatattgcaagttgctgctgga
aggtctccaacgttatttggtgttccaaaggttgtcgaaccccctctggtggtccaggac
atatgtagtgatcaccacactaaagctgattcctcgattcctcaaccatcgaggcctcaa
gaaccttccactagcactcctagtgtgcgtgaggtcttacctacctctggacccactaaa
gatgctgataatatatctaactgcagtgaaagaaggaatgtcgtcaaaattagggtgaag
cttactgcatcttccagtaaagcgtcggatgctgaccacagagtccattctcatggtgga
agaaatgaaaatgaagcgggtccatgtagttctatgtcagtggatgccccaatggttgaa
gcagcaactgaaccattaaatgtaagcaatcataacattgaggaacagaactcatgtcat
gaccgtgagtcaaggatgtcagcaagcattggcaatgctaaactaattgacaggcatgag
atttccaaggaactacagtgtactgctgattcaaggctggatgtccttcccaaggatcag
ttctctcctgccgttaatcctttgggagttgtagacaagcctggtagtcagcttgaagta
gtctccaccagctacgatggaaaccaagctccagagtctgtgaatggagtggaaacaaaa
gagaagaagaaaaaagacaagaaagataaaaagcggaaacgtgatgaaaaacgagataag
aaagatgatccagagtatctggagaaaaagcggcttaagaaagagaagaaaaaaatggag
aaagagtcggccaggaagcagctggaaggtgaaggaaaggctactcctgaacagcagaaa
atagtgaaaccttcagggttgcaggaagttttgccagcaaggccgccaacagctccggtg
cgaagtgctgaaccagctccatcacaaagtgctgaaccagcagtagtgcgaagctctgaa
ccccaaatatcaagcaaggaagcaaccgtagatactgcacgaacagcagccaaaccaagg
ataaagatcaaagtcaagcccttgataagaaaaccagaagaaagttga
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