Panicum virgatum (switchgrass): 120660767
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Entry
120660767 CDS
T07260
Name
(RefSeq) protein transport protein SEC16A homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120660767
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120660767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
120660767
NCBI-ProteinID:
XP_039795679
LinkDB
All DBs
Position
1K:664480..671590
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AA seq
1500 aa
AA seq
DB search
MADDQTDADFFDKLVDDDDAPAPANSALARDVSDISLADDDLPTLPPAPETAPPEGGSPG
SAKAGAGLHTTVKQVQWASFGGGPDDGADPFAELSGAAGDDSFFGTQTLETSAGTSDHDL
FGANHQSLAAPVTDQDFFGGTSSSNQNVDGQLQRTGSGAVDFTDPKYLEAMYPGWKYDEA
TQQWYQVDTSNTIGNAAQLVDNSSQNLQQQLDTSYLQNSAHAGLETIAEEGAATAGVSSW
GQGGASEYPPNMFFYAEYPGWYFDTNTQQWHSLESYQQAAMQAGTASAVQTGANDGAVVT
SGGTSYNAKQTEDLAVHNQVTQHNSFMTSFTPQSQRQMTGAFGNTMQSESATDNSLTSSF
YGFDQHANAETSSSSTSQQVGFNTAETVSDHYGAHKGFESASLQSGYSSSDSQQSSYKAF
EPSTGYRAGYKAFEPAMGTSHNVFQQSAGNQGGYKAFEPSMSNQSGYNAFEPSTSRHSAS
KGFMPSTGHQTGYKGSEASTVNQASYNEFETSTGYNTSFKIFEPSSAQHAGYMGSQPSSG
HQPNYLGFDTSANHQGYGDVNGAVDTRGFAPVQSTYHGQNQAIANPQEHLSNSYLGTENS
MNFNQQQFPVANTSNLQFGHSHDGRSSAGRPPHALIAFGFGGKLIVMKETSSMTTSFNSG
NQGNSCGTVSVLNLSEVVFDKVDTSSITNGSTLGYFNALCHQPVPGPLVGGSAASKDVNK
WLDEMIAWYEPSSTALQRGDTRKLLISLLKILCQHYGKLRSPFGADPQEETDGPEMAVTK
LFSSFKRSSVHMRDYGSIVHCMKNIPSERQMQAVAQEVQNLLVSGRRKEALQCAQGGQLW
GPAIILALQLGDQFYVDTVKRMAHSHFISGSPLRTLCLLIAGQPADVFNVENNVNNDYGT
SHQPMEPGPNGMLDDWEENLAIITANRTKGDDLVITHLGDCLWKEKIEVAAAHSCYLVAE
LNIDSYSESARLCLIGADHLKCPRTFASPEAIQRTEVYEYAKVLGNSQYILLPFQPYKLI
YAYMLAEVGKISDSLRYCQASLKVLKASGRAPELEAWKQLFSSLEERIRTHQQGGYGTNL
APAKLVGKIFTSLDKSISRMMGTPSAPLPPLPHGSVSDRESHAAPAAAKFVNSQSVMAMS
SLMPSASIQSMTEVAENSGGAGRKMAHNRSVSEPDFGRTSKQGAGSDGMQSGASGSGSSR
FGWLGSTLQKTMGFVSKTHRQAKLGDQNKFYYDEKLKRWVEEGAAVPAEEPPLPPPPTKP
SFQNGMPDHKLNGPMSGSHAPNGVTEWKSSNSSEQGLGMPPIPPSQNQFSARGRMGVRSR
YVDTFNKSSASGAVPSYNKLAAPSVTPPAGAKFFMPAALASDQMVPHQAAEIHSETIHQD
ERSASPPAETSFSSPPPSAQFSAAMSSTIHRQSSMDNISTPFQGSVVSSLSSSSSLSRSR
AASWSGTYSEQLSAFSSAKSPEGQTMPSPLMPGKPSHSRSNSISSMQLNGLTEDLHEVEL
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgaccagaccgacgccgacttcttcgacaagctcgtcgacgacgacgacgcc
cccgcgcccgccaactccgccttggctcgcgacgtctccgacataagcctcgccgacgac
gacctacctaccctgccaccggcccccgagacggcgcctccggagggaggctcaccgggc
tcagccaaggccggcgccggcctccacaccaccgtcaagcaggtgcagtgggcctccttc
gggggcggcccggacgatggcgctgatccatttgctgagctctcaggagccgccggcgac
gacagctttttcgggacccagaccctggagacctccgcaggcacctcggatcatgacttg
ttcggtgcgaatcatcagagcttggccgctccggtgacggatcaggacttcttcgggggg
acctccagctccaatcagaatgttgacggccagcttcagaggaccggcagtggtgctgtg
gatttcacagatcccaagtatctggaggccatgtaccccggatggaagtatgatgaggcg
acgcagcaatggtaccaggttgacacttccaatacaatagggaatgcagctcagttggta
gacaatagcagccagaatctacagcagcagcttgacacatcctacctgcagaattcagcg
catgcagggcttgagaccattgctgaggagggcgctgccacagctggcgtctcaagttgg
gggcaggggggcgcctcagagtacccacccaacatgttcttctatgcagaatacccaggt
tggtactttgataccaacactcagcagtggcactcgcttgagtcataccagcaggctgcg
atgcaggctggaactgctagtgcggttcagactggtgcaaatgatggtgctgttgtgact
tctggtggaacaagctataatgccaaacaaactgaggaccttgctgtccacaatcaggtg
acccaacataactcgttcatgactagtttcactcctcagagccagcgacagatgactggt
gcgtttggtaacactatgcaatctgaaagtgctacagataatagccttaccagtagtttc
tacggttttgatcaacatgcaaatgctgagactagtagttcctctacaagccaacaggtt
ggctttaacacagctgaaactgtttcagatcactatggtgcacacaagggctttgaatca
gcaagtcttcagagtggttatagctcttctgacagtcaacaatccagttacaaggcgttt
gaaccttccacaggttatcgcgccggttataaagcattcgaacctgccatgggtaccagt
cacaatgtgttccaacagtccgcaggtaatcagggaggttacaaggcgtttgaaccttcc
atgagcaaccagagtggatacaacgcattcgaaccttccacaagtcgccatagtgcttcc
aagggattcatgccttccactggtcaccagactggttacaagggatccgaagcttctaca
gttaaccaggccagctacaatgaatttgaaacttctacaggttacaataccagtttcaag
atatttgagccctcttcagctcaacatgctggttacatgggttcccaaccttcttcaggt
catcaaccaaactacttgggatttgacacttctgccaatcaccagggttatggtgatgtc
aatggtgctgtggatactcgaggatttgccccagtgcaaagcacataccatggtcagaac
caagcaatcgcaaacccgcaagagcacctgtcaaacagctatttgggtacagagaactcc
atgaactttaatcagcaacaatttccggttgcaaatacctcaaatttgcagttcggccac
tctcatgatgggaggtcatcggctggacgaccaccacatgccctcattgcttttgggttt
ggagggaaacttatagttatgaaagaaaccagctcaatgaccacaagctttaacagtgga
aatcaggggaactcttgtggcacagtgtcagtccttaatctatcagaggtggtttttgat
aaagttgatacttcaagcatcactaatggcagcacacttggttacttcaatgctttatgc
catcaacctgttcctggtcctctagttggtggaagtgctgcatcaaaggatgtgaataag
tggcttgatgagatgattgcatggtatgaaccttcctccactgcactccagagaggtgat
actcggaagttgcttatttcattgctgaagatactgtgtcagcactatggaaaactccgt
tcaccttttggtgctgacccacaagaggagacagatggcccagaaatggcagtaactaag
ctattttcttcatttaagagaagtagtgttcatatgagggattatggatccattgttcac
tgcatgaaaaatattccctcagaacgtcagatgcaggctgttgcacaagaggtccaaaat
cttctagtttctggaagaagaaaagaggcccttcagtgtgcccagggaggtcaactgtgg
ggacctgcaatcatactggctttacagcttggtgatcagttttatgtggatacagtgaag
agaatggctcactcccattttatatctgggtcacctctgcgaaccctatgccttcttatt
gctggacaacctgcagatgtttttaatgtagagaacaatgtcaacaacgactatggtaca
tcccatcaacctatggagcctggtcctaatggtatgttggatgattgggaggagaatttg
gctattattactgcaaacaggacaaaaggtgatgatctcgtaattacccatcttggtgat
tgcctttggaaagagaaaattgaggttgcagctgctcattcatgctatttagttgctgaa
ctaaatattgattcgtactcggaaagtgcaaggttatgcctcattggcgcagaccacttg
aagtgtcctcgaacatttgccagccctgaagccattcagaggacagaagtgtatgaatac
gcgaaggtgcttggtaattctcagtatatcctgctaccctttcagccatataagctgata
tatgcatacatgcttgcggaagtggggaagatttctgattctttgaggtattgccaagca
tctttgaaggtgctgaaagcctctggccgtgcccctgaattggaggcatggaaacaattg
ttttcttctctagaggagaggatacgcactcaccagcagggtggatatggcacaaatctt
gccccagcaaaactagtggggaagattttcacctcgcttgataaatctatatcccgcatg
atgggtacaccatccgcaccacttccaccactgccacatggatctgttagtgatagggag
agccacgctgcgcctgcagctgcaaaatttgtaaatagccaatcggtaatggccatgtca
tcattaatgccatctgcttcaattcaatctatgactgaggtagcagagaatagtggtggc
gctggcaggaaaatggcacacaacagaagtgtttctgagccggactttggcagaacatca
aaacagggtgccggatcagatggcatgcagagtggtgcatcagggtcgggcagttctcgg
tttggttggttgggctccacactgcagaagactatgggatttgtgtcgaaaacccaccgt
caggcaaaattaggggaccagaacaagttttactatgatgagaagttgaagcggtgggta
gaagaaggtgctgcagttcctgctgaggagcctcctctacctccacctccaacaaaaccg
tctttccagaatggtatgccagaccataagttgaatggccccatgagtggaagccatgct
cccaatggagtcacagaatggaaatcctcaaattcttccgagcaaggtttggggatgccg
ccgattccacctagccaaaaccagttttctgctcggggacggatgggtgtccggtccaga
tatgtagacacattcaacaagtctagtgcatctggagcagtgccatcgtataacaaactg
gctgctccttctgtgacaccgccagcaggtgccaagttctttatgccagccgcacttgct
tctgatcagatggtgccacaccaagcagcagagatacacagtgaaaccatccatcaggac
gagcggtcagcctcaccaccagcagaaacatcattttcttcacccccaccatcggcacaa
ttttcagcagcaatgtcgtcaacaattcatcgccaatcgagtatggacaacatctccact
ccattccagggatccgtggtgtcatcgttaagcagcagcagctcattatcaagatcacga
gctgcgtcctggagcgggacatactctgagcagcttagtgctttttcgagcgctaaatct
cccgagggacagaccatgccatcaccactcatgcccgggaaaccgtcgcacagtcgttcc
aacagcatctcatctatgcagttgaacggattgacagaggatcttcatgaggtggagctc
tga
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