Panicum virgatum (switchgrass): 120660854
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Entry
120660854 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP58-like
KO
K14307
nucleoporin p58/p45
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120660854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120660854
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120660854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleo_P87
Motif
Other DBs
NCBI-GeneID:
120660854
NCBI-ProteinID:
XP_039795430
LinkDB
All DBs
Position
2N:complement(48132039..48136556)
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AA seq
488 aa
AA seq
DB search
MAFSFASPAASNPFQTPSASNPFQTPSASNPFQTPAAPNPFQTPAPATTQAPSSSPSPFQ
FSFQQPQPQPQPQQQQQQVAPAAQPQQQKLMLYTTDMKPAGYSTKWDDLHDESQKALLQI
EDKIREYKDESERLDQCSRLYDSSISNVNFELDACRIAQELGGTTTVMEREKASIQELMT
VVNEMMWNTEFAMRSYMMLRPSFVRPGARVANGGSLNPSAGAPPNQPVVYFYSGVPKRPS
VFMQHTVNRFECYLAECCKWISELEQLVQIENNKRSSDSVEALPKVTSNVHDYFIYVTSK
VENLHQYVESMKTEYLNEQRRMGNRNDPFLEANRREAAKQEAAARRVHPTLHLPAPAPAP
AQPTTQLAAPAASQPQQSSFPSAATSSSVFSAFSTPASAPSSSSLFATPTTPAPSGSLFG
TSGSAQLTTPFGTASTPTLASTPAPGFGTSTSLGGTSLFSTPFGGGATASGSSFGGASKG
RSKNRGRR
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcgttctccttcgcctcgccggctgcgtcgaaccccttccagacgccgtcggcgtcg
aacccattccagacgccgtcggcgtcgaacccattccagacgccagcggcgccgaacccc
ttccagacgccggccccggccacgacgcaggcgccgtcctcctcgccctcgccgttccag
ttcagcttccagcagccgcagccgcagccgcagccgcagcagcagcagcagcaggtggcg
ccggcggcgcagccgcagcagcagaagctgatgctgtacacgacggatatgaagcctgcc
gggtacagcaccaagtgggacgatctgcacgacgaatcgcagaaggccttgctccagatc
gaggataagatacgggagtacaaagatgagagtgagaggttggatcagtgcagtcgtctt
tatgactcctcaatctcgaatgttaattttgagcttgatgcgtgtcgcattgctcaggag
cttggagggaccaccactgtgatggagagggagaaggcttccattcaagagttgatgact
gttgtcaatgaaatgatgtggaacacggaatttgctatgaggtcatatatgatgttgagg
ccaagcttcgtccgtccaggtgctagagttgcaaatggtggttctttaaatccttctgct
ggtgctccacccaatcagccagtggtatatttctacagtggagtcccgaagcgcccttcc
gtttttatgcagcatactgtcaacaggtttgagtgttatctagcagagtgttgcaagtgg
atcagtgagctagagcagctggtacaaattgagaataataaaagatcatcagattctgta
gaggctcttccaaaagttacgtcaaatgtgcatgactacttcatctatgttacttctaag
gtggaaaatcttcatcagtatgttgaatcaatgaaaactgaatatcttaatgaacagcgt
cgtatgggtaataggaatgatccatttctggaggcaaacagaagagaagcagctaaacaa
gaagctgctgccagaagggttcatccaactttgcatttgcctgctcctgctcctgctcct
gcacagcccacaacacaacttgctgcaccagcagcaagccaaccacagcaatcttctttt
ccttctgccgcgacttcgtcaagtgttttttcagcttttagcactccggcttctgctcca
tcttcatctagtctctttgcaactccaacaactccagctccatctggcagcctttttggt
acatccggatcagctcaattgaccacaccatttggaacagcctccactcctacactagca
tcaacaccagctcctggatttgggactagcacatctttgggggggacatcactattttct
acaccatttggaggtggggctacagcttcaggttccagctttggtggtgcatcgaaaggg
aggtcgaagaaccgggggcgtcgctag
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integrated database retrieval system
