Panicum virgatum (switchgrass): 120660898
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Entry
120660898 CDS
T07260
Name
(RefSeq) protein transport protein SEC23-like isoform X1
KO
K14006
protein transport protein SEC23
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120660898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120660898
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120660898
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
120660898
NCBI-ProteinID:
XP_039795497
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All DBs
Position
2N:48871446..48887820
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AA seq
762 aa
AA seq
DB search
MSEFLDLEAQDGIRMPWNVIPGTKQEALNCVIPVSAIYTPLKSIPDIPVLPYSPLRCRMC
RSILNPFSIVDYVAKIWVCPFCFQRNQFPQHYSSISENNLPAELFPQYTTVEYMTSTETG
PVVPPVFIFVVDTCIIEEEIGYLKSALAQVVELLPDNSLVGFITFGTYVQVHELGFGLLP
KAYVFKGTKEVTKEQILEQMCFFAGKKMPTTGVIAGTRDGLSSESISRFLLPASECEFVL
NSVIEEMQKDPWPVPADQRASRCTGVALSVAANLLGVCVPGSGARIMAFVGGPSTEGPGS
IVSKSLSEPIRSHKDLDKDSAPLYDKAVKFYNQIAKQLVHQGHVLDLFACAVDQVGVAEM
KVAIEKTGGMVVLAESFGHSVFKDSLRHIFQSADDNLGLSYNGILEINCSKDVKVQGIIG
PCTSLEKKSPLSSDTVIGQGNTSAWKMCGLDKKTSLCFVYDIAKKDGPDSIGQSTSNLFY
FQFLTYYQHNEGMMRLRSTTISRRWVSGTDNVEELVAGFDQEAAAAVMARLVSFKMETEV
DFDPVRWLDRALIRICSKFGDYRKETPSSFSLSPRLSIFPQFIFNLRRSQFVQVFNNSPD
ETAYFRMMLDRENVANAVVMIQPSLISYSFQSGPEPVLLDVTTIASDKILLLNSYFTVVI
FHGVTIAQWRKAGYQDQEGHEAFAQLLKAPHEEANSIIKERFPVPRLVVCDQYGSQARFL
LAKLNPSVTYNSDNPAPGGDVIFTDDVSFQVFMDHLQRLAVQ
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagttccttgacctagaggcacaagatgggataaggatgccctggaatgttatt
ccaggcacaaagcaggaggctttgaactgtgtgattcctgtttccgctatctatacacct
ctgaagtcaattcctgatattccggttctcccatactcacctcttcgctgtcgcatgtgt
cgttccatcctcaatcctttctccattgttgactatgttgctaagatctgggtctgtcca
ttctgctttcagcgcaatcaattccctcaacactactcctccatctcagaaaataacctc
cctgcagaactctttcctcagtataccaccgttgagtacatgacgtcaaccgaaactggt
cctgtagtgccaccggttttcatttttgttgtagatacttgcattattgaagaagaaatc
ggttatttgaagtctgcattggcacaagttgttgagctattaccagataattcccttgtt
ggattcattacttttggaacgtatgtgcaggttcatgaattgggttttggcttgttgcct
aaggcatatgtgtttaagggaacaaaggaggtcaccaaagaacaaatattggaacaaatg
tgcttctttgcagggaagaaaatgcccacaactggggtgattgctggtaccagagatggt
ctttcatctgagagcatctctaggttcctgctgcctgcttctgaatgcgagtttgtgttg
aactcagttatagaagaaatgcaaaaggacccttggcctgttccagctgatcagcgggca
tcaaggtgcactggagttgccttaagtgttgcagccaatctccttggggtttgtgtccct
ggatcaggtgctaggataatggcatttgttggtggtccatctacagaaggccctggttct
attgtatccaaatccttatcagagccaattcgctcacacaaggaccttgataaagactcg
gcaccactatacgacaaagctgttaagttctacaatcaaatagcaaagcagcttgtgcac
caagggcatgtgctggatttgtttgcctgtgcagtagatcaggtaggagtagctgaaatg
aaggttgcaattgagaagactggaggaatggttgtgcttgctgaaagttttggtcattct
gttttcaaggattcacttcgccacatttttcagtcagcagatgacaaccttggtctatca
tacaatggtattcttgaaattaattgttcaaaggatgtcaaggttcaaggcatcattgga
ccttgtacttccctggagaagaaaagtcctttgtcttcagacactgttattggtcaagga
aacactagcgcttggaaaatgtgcggtcttgacaaaaaaacatcactttgctttgtatat
gacattgcaaaaaaagatggcccagattcaattggtcaatcaacaagcaatctgttctac
tttcaattcttaacctactatcagcacaatgagggtatgatgagattaagatcaaccaca
atatccagaagatgggtctctggcaccgataatgtggaggaattagtagctggctttgat
caagaagctgctgctgcagtcatggcacgcttggtgtcatttaagatggaaactgaggtt
gattttgacccagtaagatggcttgatcgagctttgatacgtatatgttctaaatttgga
gactatcggaaggaaacaccctcgtccttcagtttatccccacgtctatcaatatttcct
cagtttattttcaatttgaggcgttctcagtttgttcaggttttcaataacagtcctgat
gaaactgcatattttaggatgatgttggacagagagaatgtagccaatgcagttgtgatg
attcagccttcacttatatcctattcatttcagtcaggaccagagccagttctcttggat
gtaactacaattgcttctgacaagatccttttgttgaattcttattttactgttgtcata
ttccatggggtaaccattgcacagtggcgaaaagctggttaccaagatcaagaaggtcac
gaggcgtttgcccagttgttaaaagctccacacgaggaagctaattcaataataaaggag
cggtttcctgtgccccgtttggtagtctgcgatcaatatggatctcaggctcgattttta
ctggcgaagctaaatccatcagtgacatataactcagataatcccgcccctggtggagat
gtaatcttcacagatgatgtgagcttccaggttttcatggaccatctccagcggctagca
gtccaatag
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