Panicum virgatum (switchgrass): 120660952
Help
Entry
120660952 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase ATL6-like
KO
K10664
E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120660952
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120660952
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
120660952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-ANAPC11
zf-RING_UBOX
zf-RING_16
zf-C3HC4_3
Prok-RING_1
zf-Nse
RINGv
Tmpp129
PHD
zinc_ribbon_16
PHD_NSD
zf-RING-like
Prok-RING_4
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
120660952
NCBI-ProteinID:
XP_039795545
LinkDB
All DBs
Position
2N:complement(49722773..49724377)
Genome browser
AA seq
395 aa
AA seq
DB search
MGTILPPSNGRFHPLFLLVLAVADFTVVQGQPTQNGEMPYASFSPSMAIVIVVLIVAFFF
LGFFSIYVRHCYGNGQSGSSASPLPNGVAARSRRQRGLDAAVLETFPTMAYADVKAHKAG
KGALECAVCLSEFDDDETLRLLPKCSHVFHPDCIDTWLASHVTCPVCRANLVPDPNAPAD
DAPAEQQPAPPPAQELPSPTSAPAAAAVVIDVEETEEQRIIREEADELMRIGSVKRALRS
KSGRAPAPFPRSHSTGHSLAAPAPGTGAGDERFTLRLPDHVLRDLAAAGKLQRTRSLVAF
RASRGGSTRHGAGVRAGEGSSRGGGRSIRLGQSERWPSFLARTFSARLPAWGSRSTRRGA
EADGSSKGGRAAGAAGAGAKSVEFDDQACLAGQRV
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgatactcccgccaagcaatggccgcttccatcccctcttccttctcgtgctc
gccgtcgctgatttcacggtggtgcaggggcagccgacacagaacggcgagatgccctac
gccagcttcagcccgtccatggccatagtcatcgtcgtgctcatcgtggccttcttcttc
ctcggcttcttctccatctacgtccgccactgctatggcaacggccagagcggctcctcc
gcgagcccgttacccaacggcgtcgccgcgcgctcgcggcgccagcgcgggctcgacgcg
gcggtgctcgagaccttccccaccatggcgtacgccgacgtgaaggcgcacaaggccggc
aagggcgcgctcgagtgcgcggtgtgcctcagcgagttcgacgacgacgagacgctgcgc
ctgctgcccaagtgctcccacgtcttccacccggactgcatcgacacctggctcgcctcg
cacgtcacctgccccgtctgccgcgccaacctcgtcccggaccccaacgccccggccgac
gacgcgcccgcggagcagcagccggctcctcctcccgcgcaagagctgccgtcgcccacg
tccgcgccggctgcggcggcggtggtcattgacgtggaggagacggaggagcagaggatc
atcagggaggaggccgacgagctgatgcgcatcggcagcgtcaagcgcgcgctgcgctcc
aagtccggccgcgcgcccgcgccgttcccgcgctcgcactcgacggggcactcgctcgcg
gcgcccgcgcccggcaccggcgccggcgacgagcggttcacgctgcggctgcccgaccac
gtgctccgggacctcgccgcggcggggaagctgcagcgcaccaggagcctcgtcgcgttc
cgcgccagccgcgggggcagcacgcggcacggcgccggcgtcagggccggcgaaggcagc
agccgcggcggcgggaggagcatccggctgggccagtccgagcggtggccgtcgttcctg
gcgcggacgttctccgcgcggctccccgcgtggggttcgcggtcgacgcggaggggcgcc
gaggccgacgggtccagcaagggcggcagggcggccggcgccgccggcgcaggcgcgaag
tcagtggaattcgacgaccaggcgtgcttggctgggcaacgtgtttga
DBGET
integrated database retrieval system
