Panicum virgatum (switchgrass): 120660960
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Entry
120660960 CDS
T07260
Name
(RefSeq) isoamylase 3, chloroplastic-like isoform X1
KO
K01214
isoamylase [EC:
3.2.1.68
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120660960
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.68 isoamylase
120660960
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Motif
Pfam:
Alpha-amylase
CBM_48
ISOA1-3_C
Isoamylase_C
DUF5696
Motif
Other DBs
NCBI-GeneID:
120660960
NCBI-ProteinID:
XP_039795555
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Position
2N:complement(49814466..49833066)
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AA seq
779 aa
AA seq
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MDSVGTNRTPLRSAAAAAPATRSSALPWPHCHPAVGNRLAATKLGIAARCGGAGGYFGKV
QRFDAARSTTARAQSGKAARSVIREMGHTASDSEMPLKYSSGKAFPLGVSQVDGGLNFAI
FSQHASSVTLCLKLPERGTQDDEEIVEFALDRQKNKTGDIWHVSVEGLPASGVLYGYRIN
GPQGWQQGHRFDDSVILLDPYAKLVSGRKYFGVDKEESSQFFGTYDFDSSPFDWGDDYRL
PNLPESDLVIYEMNVRAFTADESSGLGPAVRGSYLGLIDKIPHLLELGVNAVELLPVFEF
DELEFKRFPNPRDHMVNTWGYSTINFFAPMSRYASAGGGPVAASKELKKMVKALHNAGIE
VILDVVYNHTNEADDANPYMTSFRGIDNKVYYMLDLNNNPQLLNFSGCGNTLNCNHPVVK
ELVLDSLRHWVKEYHIDGFRFDLASVLCRGPDGSPLDAPPLIKEIAKDSVLSRCKIIAEP
WDCGGLYLVGRFPNWDRWAEWNGQYRDDIRRFIKGDPGLKGVFATRVSGSADLYQVNNRK
PYDSINFIIAHDGFTLCDLVSYNSKHNDANGECGRDGCNDNYSWNCGVEGETNDLIVRRL
RSRQMKNFHVALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTHINNFQWGQLEERKDGHF
RFFSEMIKFRHSHPILRRDRFLSKNDVTWHEDCWENQESKFLAFTIHDHNSGGDIYLAFN
AHEYFVDAVIPPPPHHKSWSRVVDTNLESPNDIVPEGVLFTDSGYRIAPYSCILLKAKP
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggattccgtcggtacgaatcgcaccccgctgcgctccgccgccgccgccgccccagcc
actcgaagcagcgcactgccgtggccgcactgccaccccgcggtcggcaatcgcctggcg
gcgactaagctcgggattgcggctcggtgtggaggagcaggagggtatttcggcaaggtt
cagagatttgacgccgcacggagtacaacggcgagagcgcagagcgggaaggcggcgaga
agtgtgatcagggaaatggggcacacggcatctgacagtgaaatgcccttgaaatattct
tcggggaaagctttccctctaggagtgtcgcaagttgatggtgggctgaattttgcgata
ttctcgcagcatgcttcttctgttaccctttgtttgaaacttcctgaaagaggcacccaa
gatgatgaggaaattgtcgagtttgctttagatcgccaaaagaacaaaacaggagatata
tggcatgtgtccgtggagggtttgcctgcttctggtgttctttatgggtatcgcattaat
ggtcctcaagggtggcaacaaggtcataggtttgatgacagcgttattctactggaccct
tatgcaaaattagtttctggtcgaaaatactttggggttgacaaagaggagtcaagccag
ttttttggaacttatgacttcgatagctctccctttgactggggtgacgattatagactt
cctaatttgcctgagtcagatcttgttatatatgaaatgaacgtccgcgctttcactgct
gatgagtcaagtgggcttggtccagctgttcgcggaagctaccttggtctcattgacaaa
attcctcatttgctggaacttggcgttaatgcagtggaactactccctgtttttgagttt
gatgaactggaattcaagaggttccctaacccaagggaccacatggtaaatacatgggga
tattctacaatcaacttttttgcgcccatgagtcgttatgctagcgctggtggtggaccg
gtggctgcttccaaagagcttaagaaaatggtcaaagcattacataatgctggaattgag
gttattctggatgttgtttacaaccatacaaacgaagctgatgatgctaacccttatatg
acttctttccgtggcattgataacaaggtctattacatgttagacctgaacaacaatcct
cagctgctgaacttctcgggttgcgggaatacactaaactgtaaccatcctgttgtcaag
gagcttgtgctggacagtttgagacattgggttaaggagtatcacatagatggatttcgg
tttgaccttgcaagtgttctttgtcgtggaccagatggcagtcctcttgatgcacctcca
ctcattaaggaaattgccaaagactctgtattgtctaggtgtaagatcattgctgaaccc
tgggactgtggtggcctttatctagtagggaggttccctaactgggacaggtgggctgaa
tggaacggacagtacagagatgatattcgaagatttattaagggagatcctggtttgaag
ggggtatttgccactcgtgtttctggttctgcggatctctaccaggtgaacaatcggaag
ccttatgatagcataaactttataattgctcatgatggatttactttatgtgaccttgtt
tcatataactctaagcacaatgatgctaatggagaatgtggtcgtgatgggtgcaacgac
aactatagctggaactgtggcgttgaaggagaaacaaatgatttaattgtgagacgtctt
cgttccaggcaaatgaagaacttccatgtggcactaatgatctctcagggcactccaatg
atgctgatgggagatgaatatggtcacacacgctatggaaacaataatagctatggacat
gatactcacataaataactttcagtggggccagttggaagaaagaaaggacggccatttc
aggtttttctcggagatgatcaagttccgtcatagccatcctatactgagacgagatagg
tttctcagcaaaaatgatgtcacctggcatgaggattgttgggagaaccaggaaagcaaa
tttttggcattcacgatacatgatcacaattctggtggagatatctatttggcattcaat
gctcatgagtactttgtggatgctgtaattcccccaccaccacaccataaatcttggagc
cgtgtggtggataccaacctggaatcaccaaatgatattgtcccagaaggagtactattc
acagattcagggtataggattgctccttactcttgcatactgctcaaggcaaagccttag
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