KEGG   Panicum virgatum (switchgrass): 120661089
Entry
120661089         CDS       T07260                                 
Name
(RefSeq) splicing factor U2af small subunit A-like
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120661089
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120661089
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 related factors
    120661089
 Complex B
    120661089
SSDB
Motif
Pfam: zf-CCCH RRM_1 Torus zf_CCCH_4 PheRS_DBD1 zf-CCCH_4
Other DBs
NCBI-GeneID: 120661089
NCBI-ProteinID: XP_039795722
LinkDB
Position
2N:51485477..51487278
AA seq 284 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSISPTLLLCNMYQRPDMITP
GVDAQGNPIDPERIQEDFEDFYEDIFEELSKHGEIDSLHVCDNLADHMIGNVYVQFREEE
QAARALQGLQGRYYSGRPIIAEFSPVTDFREATCRQFEEHSCNRGGYCNFMHVKQVGRDL
RRKLFGHLHRSRRSHSRSSRSPSPYRHRRSSSRSRDRDDDYDYYYHYRSGSGSRRSSERH
RSHDSDGSRRRRGRSRSRSPVREGSEERRARIEQWNREREAAQV
NT seq 855 nt   +upstreamnt  +downstreamnt
atggctgagcacctggcgtccatctttggcacggagaaggaccgcgtgaactgccccttc
tacttcaagatcggcgcgtgccggcacggcgaccggtgctcccgcctgcacaacaagccg
tccatctcgccgacgctgctgctctgcaacatgtaccagcgcccggacatgatcaccccg
ggcgtggacgcgcagggcaaccccatcgacccggagcggatccaggaggacttcgaggac
ttctacgaggacatcttcgaggagctgagcaagcacggcgagatcgatagcctccacgtc
tgcgacaacctcgccgaccacatgatcgggaacgtgtacgtgcagttccgcgaggaggag
caggccgcccgcgcgctgcaggggctgcagggccgctactactcgggccgccccatcatc
gccgagttctcaccggtcacggacttccgggaggccacctgccgccagttcgaggagcac
agctgcaaccgcggcggctactgcaacttcatgcacgtgaagcaggtcggccgggacctg
cggcggaagctgttcggccacctgcaccggtcccgccggagccacagccggagcagccgc
agcccgagcccgtaccgccaccgccggagctcgtcgcggtcgagggaccgcgacgacgac
tacgactactactaccactaccgtagtggcagtggcagccggaggagcagcgagaggcac
cgcagccacgacagcgacgggagccgccgccggcgcgggcggtcgaggagccggagcccg
gtgagggaaggcagcgaggagcggagggcgcggatcgagcagtggaaccgcgagagggag
gccgcgcaggtgtga

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