Panicum virgatum (switchgrass): 120661132
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Entry
120661132 CDS
T07260
Name
(RefSeq) KH domain-containing protein HEN4-like
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120661132
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120661132
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
KH_5
KH_Vigilin
MOEP19
Gp_dh_C
Motif
Other DBs
NCBI-GeneID:
120661132
NCBI-ProteinID:
XP_039795782
LinkDB
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Position
2N:51870181..51874705
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AA seq
623 aa
AA seq
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MEVVPIPAGAGGAASSSSSSSTPSPSTKRPTTTLRLLCPSSRAAALRPSRDLHVDHPPVG
DEVVLTISGPDAPAAAVRAWERVVGHRVEGDEAMGGEEEEREVTGAVGCRMLAAGGQVGC
VLGKGGKTVERMRQESGAQIRVFRNREQLPPCAGPGDELIHISGSFSQVRKGLLAVSTCL
QDNPRLETSSIPMGRPFGPPVSGTGCPPGMDPHSQRNYLPPPMPDYHTRNYPNNAGAPAP
RFFFEHEIVFRMIILNDMVGSIIGKGGSTIRALQSETGASIKILEPIADSDERIVAISAR
ENSDMMHSPAQDAVVRVYSRISEASIDRNSPIPARLLVPAQHIGCLLGKGGSIITEMRKL
TGANIRIFGNEQIPRCAQRNDEMVQVTGSFQSIHDALIHITGRIRDVIIPKPHPSGGMPP
YPPAGNIPLHQPRQEPPPPHPHHSGGMPPYPMHSFRADAPMGPFETGGHRPPLAHSMEHM
GADRMPYSYGCEQGGPRPFLEQPSPRTWAPEAPNTNIEAPKNMPDAVASTDFRKGPVAGE
NQVATPTSTTTEVVIPCKYIGSICGTNGSDLAEIKKMSGASITVHDPKPGDTNSIVVICG
DPEQTKKAQSLIHAFIFCGLCPT
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcgtccccatcccggccggcgccggcggcgccgcgtcctcctcgtcctcctcc
tcgaccccttccccatccaccaagcgcccgaccaccacgctccgcctgctatgcccctcc
agccgcgccgccgcgctccggccctcacgggatctccacgtggaccatccgcccgtgggg
gacgaggtcgtgctcaccatctccgggccggacgcccccgcagcggcggtgagggcgtgg
gagcgcgtggtgggacacagggtcgagggcgacgaggccatgggaggggaggaggaggag
agggaggtgacgggcgccgtcggctgccggatgctggccgccggcggtcaggtggggtgc
gtgctagggaagggagggaaaacggtggagcggatgcggcaggagagcggagcccagatc
agggtgttccggaacagggagcagctgcctccctgcgctgggccgggggatgagcttatc
catataagtgggagcttttctcaagtacggaaaggactgctagcagtttcaacctgcctc
caagataatcctaggctggaaacaagcagtattccaatgggaagaccatttgggcctcca
gttagtggtactggttgtccccctggcatggatcctcattctcaaagaaactatttacca
ccacccatgcctgattaccacacaaggaattatccaaataatgctggtgcccctgcacct
agattcttttttgaacatgagatagtgttcagaatgataattctcaatgatatggtgggc
agcataattggaaaaggtggttccactatccgcgcattacaaagtgaaactggtgcttct
ataaagattttagagcctattgcagattcagacgagcgtatcgttgccatatctgcacgt
gagaattctgacatgatgcattctccagctcaagatgcagttgtccgggtttactctagg
atttcagaggcatctatcgatagaaactcacctatacctgcaaggcttcttgttccagca
caacatatcggttgccttctagggaaaggtggatccattattacagagatgagaaagtta
acaggagctaacattcgaatttttgggaatgaacaaattccaagatgcgcacaacgaaat
gatgagatggttcaggtcactggtagcttccaatccatccatgatgcattaattcatatc
actggaaggattagggacgtcatcattcccaagccacaccccagtggaggcatgcctcca
tatccacctgctggaaacatccctcttcaccaacctagacaagaaccacctcccccacac
ccacatcacagtgggggcatgcctccatatcctatgcattctttcagagctgatgctcct
atgggtccctttgaaacgggtggtcatcggccacctctcgcacattcaatggaacatatg
ggtgctgataggatgccatattcatatggttgtgaacaaggaggtcctcgtccttttttg
gaacagccatcaccaagaacctgggctcctgaggcaccaaatacaaacattgaagctcca
aaaaacatgcctgatgcagtggcatccacagattttagaaagggaccggtggcaggtgaa
aatcaagtagctacgccaacaagtacaacgactgaagttgttattccttgcaagtatata
ggctccatttgtggaaccaatggcagtgatcttgcagagataaaaaagatgtcaggtgct
tcaattacagttcacgatccaaaacctggtgatacaaattccatagttgtcatatgtggg
gaccctgaacaaaccaagaaggcacagagcttgattcacgccttcattttctgtggtctg
tgtccaacctga
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