Panicum virgatum (switchgrass): 120661141
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Entry
120661141 CDS
T07260
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120661141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120661141
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120661141
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
120661141
NCBI-ProteinID:
XP_039795799
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Position
2K:2878217..2882004
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AA seq
388 aa
AA seq
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MAAAAATALRAAGPAAGEEEAPAGESRKLFVGGIPSAAQEAELRAHFARFGEVRAAVVMR
DRETGHGRGFGFVEFEDEAAAAAALGDGDRPRHFICGRMVDVKRARTRAPRNQGEQNSQP
QQPETGRGQGHQDNRQLPAGNGTADSSNNVSYDSKKVFIGGLRDNITEEEFKAYFETFGT
VTDVVVIYDSLTSRSRGFGFVTFDSEEAVGKVMRQSFHNLNGTKVEAKIAIPKDDQYYRN
GRGRGARPFGGRGPAGYEGSAYQPYNARFGLYNGYMPQPVPAQPYFPAPYFAVGGYPYGS
GYPSQGVMTNVPGMMSRRVPPAYGTYPQMYPGFNFVYRAGYGGAATSFQQGINGGSDNKK
DQINVDMQQVDSTASVATMLEHMKLGSQ
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggctgcgacggccctgcgcgccgctggcccggcggcgggcgaggaggag
gcccccgccggcgagagccgcaagctcttcgtgggcggcatcccgtccgcggcgcaggaa
gccgagctgcgggcgcacttcgcccgcttcggggaggtgcgcgccgccgtcgtgatgcgg
gacagggagacgggccacggccgcgggttcggcttcgtcgagttcgaggacgaggccgct
gccgccgccgcgctcggcgacggggacaggcccaggcacttcatctgcggccggatggtg
gatgttaagagggccaggacaagagctccccggaaccagggcgagcagaactctcagcct
cagcagcctgaaaccggccggggccaggggcaccaggacaatcggcagctgcccgctggg
aacggtactgcggacagcagcaacaacgtgagctatgattcaaagaaggtcttcattggc
ggcttgcgggataatatcaccgaggaggagttcaaggcttactttgagacttttggcact
gtaacagatgttgtggtgatttatgacagcttgacaagccgctcgagggggttcggtttc
gtcaccttcgattccgaggaagcagtgggaaaggtgatgcgacaaagctttcataacctg
aacggaaccaaggttgaggccaagattgctatccccaaggatgatcagtattaccgtaac
ggtcgaggccgtggggcacgaccctttggcggcaggggccctgctggctatgaaggttct
gcataccaaccatacaatgctagatttggtctgtacaatggctacatgccacaacctgta
cctgcacagccctactttcctgcaccctattttgctgtgggaggctatccgtatggcagt
ggatacccaagccaaggtgtgatgacaaatgttcctggaatgatgtcaaggcgggttcct
ccagcctatggaacatatcctcaaatgtatccagggtttaactttgtatacagagctggt
tatgggggtgcagctacttcttttcagcaaggaattaacggtggaagtgataacaaaaag
gatcaaatcaatgtagatatgcagcaagttgacagcactgctagcgttgcaacaatgttg
gaacatatgaagctaggttcacaatga
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