KEGG   Panicum virgatum (switchgrass): 120661161
Entry
120661161         CDS       T07260                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RNF4-like
  KO
K22651  E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27]
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120661161
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120661161
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120661161
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_5 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 RING_XB3-XBAT31 zf-rbx1 zf-RING_10 Zn_ribbon_6 Prok-RING_4 zf-RING_4 zf-Nse Sina_RING zf-RING_6 zf-P11 U-box zf-ANAPC11 DZR TRAF3_RING
Other DBs
NCBI-GeneID: 120661161
NCBI-ProteinID: XP_039795820
LinkDB
Position
2N:complement(52353091..52356218)
AA seq 181 aa
MSTVSGTRRTPRRQTQDGLAGKVVVNLEGSPHGVPATVAGAQNSPIDVEAIEDEVQAISP
SRVPPPRNRRTRRRPVTVVDLEVEGVQEGNKRQRVVPVDYLSQHKGEGSSFQSNKEVSKE
PIFNCPICWNKMEDPSTTSCGHIFCSTCIKQAIKVQKKCPTCRKGLRANSIHRIYLPSTA
S
NT seq 546 nt   +upstreamnt  +downstreamnt
atgagcactgtcagcggcacaaggcgtaccccgaggagacagacccaagatgggttagct
ggtaaagtagtggtgaacttggaaggtagccctcatggagtaccagctactgttgctggt
gcacaaaactcacctattgatgtggaagccattgaagatgaagtgcaggcaatatcgccc
tcacgagtgccccctccaaggaacaggagaaccaggaggcgacctgtaacagtagttgac
ttggaggtggaaggtgtccaggaagggaacaaacggcagagggttgtacctgtagattac
ctctctcaacataagggagaagggtctagctttcagtcaaataaggaggtttccaaggaa
ccaatttttaactgcccaatatgttggaacaagatggaggatccctccacaacgtcttgt
ggccatatcttctgcagcacgtgcatcaagcaagccatcaaggttcagaagaaatgtcca
acgtgcaggaagggcctgagagcaaatagtatccatcggatttaccttccaagcactgct
agttaa

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