Panicum virgatum (switchgrass): 120661165
Help
Entry
120661165 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 2-like
KO
K11844
ubiquitin carboxyl-terminal hydrolase 16/45 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120661165
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120661165
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120661165
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120661165
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120661165
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120661165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
Motif
Other DBs
NCBI-GeneID:
120661165
NCBI-ProteinID:
XP_039795828
LinkDB
All DBs
Position
2N:complement(52393300..52398737)
Genome browser
AA seq
1057 aa
AA seq
DB search
MGKKVKAKPKNLRKAQERGRSASSSDVGPGDAAWQDTSHSAEEATASASGREHCGHYNRD
SAHLDKVLLEILSSKHVASCEHCREDAPRKKGGAGSKEKGGKKKKGGASKGAAAKAQAKA
DKSDMWVCLDCGRHFCGGAVEDTKPYGHARRHAKQDRHWWAARYDDPTVAYCLSCEKEVP
IEMPKLETVVAAVVDDKVVGIEDTDASGLVNPHANVIKGLPNLGNTCFFNAVLQNLLALD
RLRRKMLGPNVPTGALAMSLKKLFAETSASNHAGGALSPKNLFSSICSKYPQFRGYQMQD
SHELLRCFLDGLRTEETEARKLVEEASDAGVPTIVDSIFGGQLSSTVSSTECSHSSVKQD
QFLDLSLPVPSWRPPTKSVSSPPAKKTKQSIRDRNKSRRYGKIPARASPSVESNKEQIQT
IAACNNSQIPGSELKQVVSEKELEPSICSESCASVSNQEQKATLNVENICWLDYLADADE
TKSEILDSADSTEAGQIWESKDAAHDPLHPQDDALPKEQMLGSEHSGENTVDDAPLLQPV
ILLPYKEFDTTAKEMDETIENSQNSECAVPPPDVSPVTENNIQPAYGGDVEQDDFGFGDM
FNEPEVTSEVKKENGKAEDIDVMAWSSNSADDEVDDSNAPVSVEGCLALYTESELLSEPW
LCEHCTNAARLSADEAKNVVEMTDGAEIKDSEEMMAGGDRRQDGEKLIMRCSKEDIDQVM
ITDGCKKDIDQLMVTDDCSDNLHSGIHCKEGGCVNPSLADREQNCNGNFPDTENSTTQRT
VAAFTVEKTGPSNSQTDHKEQSVDLRSLELESSSLNKQQHDADIQYNDGHNVDITADSTS
APVSCDSDSVSCSATNNVEAEHGGGAEEVVSSSLPSDAQKTLQSAKDNEDVITRNQGRRK
RMKMVGKAQQLQDSQNKKKEDETKVFRAAMRRILISKAPPVLTINLNRFSQDSHGRYKKL
KGHVRFKEMLDIQPFMDPRCKENNTAYRLVGVVEHLGTMTGGHYIAYVRAAKIGGRQQQS
SGLKSWFYASDGQVREASLEEVLNCKAYILFYERVAD
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaggtgaaggccaagcccaagaacctgcgtaaagcgcaggaacggggtcgt
tcagcctcatcctcagatgttggacctggcgatgcggcatggcaagacacaagccactca
gcagaagaagcaactgcgtcggccagtggcagggagcattgcggccactacaaccgtgac
agtgcccatttggacaaggtcctcctggagatcttgtcttccaagcacgttgcatcgtgc
gagcattgtagggaggatgccccaagaaagaaaggtggtgctggaagcaaggagaaaggt
gggaagaagaagaaaggaggcgcctctaaaggcgctgctgccaaggcacaggcaaaggct
gataaaagtgatatgtgggtctgcttggactgtggtcggcatttttgtggtggtgcagta
gaggataccaagccctatggccatgccagacggcatgctaagcaggaccggcattggtgg
gctgcaaggtatgacgacccaacagttgcatattgcttgtcatgtgaaaaggaggtgcca
attgagatgcccaaattagagacagttgtggcagcagttgtggatgacaaggtggttggt
atcgaggatactgatgcatcaggtttggttaacccccatgctaatgtgatcaaagggctg
ccaaatcttggaaacacatgcttcttcaatgcggtgctgcagaacctcctcgctcttgat
aggttgcgcaggaagatgttaggaccaaatgttcctacaggggcccttgctatgtcactg
aagaagctctttgcagagacaagtgcttcaaaccatgcaggaggggcgcttagcccgaag
aatctcttctcaagcatttgctcaaaatatccacagttcaggggctaccagatgcaggat
agccatgaattactccgatgttttcttgatggtttacgtactgaggaaactgaagcacgg
aagctagtggaagaagcatcagatgcaggggtccccacaattgtggactccatctttggg
ggtcagctgtctagtactgtgtccagcacagaatgctcacacagttctgtgaaacaagat
caattccttgatctctcactcccagttccatcatggaggcctcctaccaagagtgtttca
tccccacccgcaaagaagaccaaacaatccatacgagataggaacaaaagtcgcagatat
gggaagattcctgctcgagcatctccttcagtggagagtaacaaagaacagattcaaaca
attgctgcgtgcaacaattcccaaattcctggttcagaactcaaacaggtagtcagcgag
aaagagctagagccctctatctgcagtgagtcatgtgcttctgtgtctaatcaagaacaa
aaggccactttaaatgtggagaatatatgctggttggattaccttgccgatgcagatgaa
acaaaatctgagattcttgattctgcagattctactgaagcaggacagatttgggaaagt
aaggatgctgcacatgatcctttacaccctcaggatgatgccctacctaaagagcaaatg
ttgggttctgagcactcaggtgagaacaccgttgatgatgctcccctcttgcagcctgtt
atcttacttccttataaagaatttgataccactgccaaggaaatggatgaaaccatagaa
aattcacagaattcagaatgtgctgttcctcctccagatgtttctccagtaacggaaaat
aatattcaacctgcatatggtggagatgttgagcaagatgactttggttttggtgatatg
ttcaatgaaccagaagttacttctgaagtcaagaaagaaaatggtaaagctgaagatatt
gatgtgatggcttggagtagtaatagtgctgatgatgaggtagatgatagtaatgctcct
gtatcagttgagggctgcttggctttgtatactgaatcagagctgctatctgaaccatgg
ttgtgtgagcactgtactaatgctgcacgcctaagcgctgatgaagcaaaaaatgtcgtg
gagatgacggatggtgctgaaataaaggatagtgaggagatgatggccggtggtgataga
agacaagatggtgagaagttgatcatgaggtgcagcaaagaggacattgatcaggttatg
attactgatggttgcaaaaaagacattgatcagcttatggtaactgatgattgctctgac
aatttacattctggtatacattgcaaggaaggtggatgtgtgaatccttctttggctgac
cgtgaacaaaactgcaatggtaattttccagacacagaaaatagtactacacagagaact
gttgcagcgttcacagttgagaagactggaccgtcaaacagtcagactgaccataaggaa
cagagtgtggatttgagaagcttagaactggagtcctcatctttgaataagcaacaacat
gatgcagatatccagtataatgatggacataatgtggatataaccgctgattctacaagt
gcaccagtgagttgtgatagtgattctgtctcttgcagtgcaactaacaatgtagaagct
gaacatggtggtggtgctgaagaagttgtgtctagtagccttccatcggatgcacaaaaa
accttgcagagtgcaaaagataatgaagatgtcatcacaaggaatcaaggcaggaggaag
cgaatgaagatggttggtaaggcacagcaattgcaagatagccaaaataagaagaaagag
gacgagacaaaggttttcagagctgcaatgagaagaattcttataagcaaggctccacct
gtattgacgattaacttgaacagattcagccaggattcccatggtcgatataagaaattg
aaagggcacgtgcgctttaaggagatgcttgatatacagccattcatggacccaagatgt
aaggaaaacaacactgcatatcgtcttgttggtgttgtcgagcacttgggaacaatgaca
ggtggtcattatattgcatacgtgagagctgccaagattggaggtcggcagcagcagagc
agtggcttgaagtcttggttttatgcaagcgatggacaagtgagagaagcctctctggag
gaagttctgaactgcaaggcttacattctgttttatgagagggtggccgactaa
DBGET
integrated database retrieval system
