Panicum virgatum (switchgrass): 120661408
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Entry
120661408 CDS
T07260
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120661408
03015 mRNA surveillance pathway
120661408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120661408
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120661408
5.6.2.5 RNA 5'-3' helicase
120661408
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120661408
mRNA cycle factors
Common to processing body (P body) and stress granule
120661408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
nSTAND3
Helicase_RecD
ATPase
SRP54
PhoH
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
120661408
NCBI-ProteinID:
XP_039796198
LinkDB
All DBs
Position
2N:58865213..58875435
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AA seq
1271 aa
AA seq
DB search
MATQPPSSAAAAAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFDYPDFPELSQPP
PRSAPLPPVAATASSSSSWPAPPPPPPPDAASPEPDLTPQDVPTPPASSSSPSPRSASKA
RTSAAADGLASGVAALSFEDPVGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVP
SCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFIS
AKSENVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQIS
AQQINKVEELWKTNPDASLEDLEKPGVDDEPQHVVLKYEDAYQYQNVFAPLIKLEADYDK
MMKESQSKDNVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYPGDSSHPTWQSV
GHVIKLTAQEEVALELRASQGVPTELSVGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSG
YIYHHLLGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKT
VTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHL
TLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKSLKRATEREILQSADVICCTC
VGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQAVLVGDHCQLGPVIMCKKAAR
AGLAQSLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDF
PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYE
GQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPR
RLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPK
KIYNDRRLFLGGGQGVTHGANFGAGASPAADKRSGRGKGQSFVPYGPPNGVHKPGVHPAG
YAVPRMPFPPFPGAPHSQPYAIPTRGMHGPIGAVPPVPQPGSRNFGAPRSNTGGPIGGHL
AHQQNSQQAMGGMGSNFNYPGLENPSSQPSGGVQMSQTGLMTQMPVQGLSQTFRDGFSIG
GMSQDFFGDDFKSQGSHVPYNIADFSTQASQGGYGVEFTQAPQSGYSGNYMNQNAHPGYS
HIGTTNDIVSQDHMAHGSHGMFTQTGYNDPSQDESSQMHYGMASAGLLQSQNMMNPLYSQ
SYAHYNTQPPQ
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccctcctccgcagcggccgcggccgcggccgccgacctctacgag
acggcctcgcagccggacccctccgcctccgccgccggcgacgcctacaccttccttgag
ttcaatacgcagggtgacgacttcgactacccggacttcccggagctctcccagccgcca
ccacgatccgcaccgctgccgcccgtcgccgccaccgcgtcctcgtcgtcgtcctggccg
gccccgccgccgccgccgccgcccgacgcggcctccccggagcccgatctcacgccgcag
gacgtccccaccccgccagcctcctcctcctcgccgtcgccgcgctccgcctccaaggcg
cgaacgtctgccgcggcggatgggctcgcctccggggtcgccgcgctcagcttcgaggat
cctgtaggcgctggcgccggggaggacgggtacgactatggcaagggagacttcgtggag
cacgcctgccggtactgtgggatccacaaccccgcttgcgtggccaggtgcaacgtgccc
tcctgccgcaagtggttctgcaactcgcgggggaacacctccggctcccacattgtcaac
cacctggtcagggccaagcataaggaagtgtgccttcacaaggatagccctttgggagaa
acaattcttgaatgctataactgtggttgtcggaatgtatttcttcttgggtttatctca
gcaaagtcggagaatgttgttgttcttttgtgcagagagccatgtttgagtgttaatgca
ttgaaggatatgaattgggatcttagtcagtggtgtccacttattgatgacaggtgtttc
ttgtcatggcttgtaaaggtaccctcagaacaggagcagctaagagctcgtcaaattagt
gctcagcaaattaacaaagtagaagagctctggaagacaaatcctgatgcctcccttgaa
gaccttgaaaagcctggtgtagatgatgaacctcagcacgtggttttgaaatatgaagat
gcttaccagtatcaaaatgtttttgctccgctgataaagctcgaggctgattatgacaag
atgatgaaagagtcgcagagcaaggataatgtaactgttcggtgggatattgggctgaac
aagaagcgtgtagcttactttgtctttccaaaggaagataatgagttgaggcttgtgcct
ggagatgagctgcggttgagatatcctggtgatagttcacatcccacatggcagtctgtg
ggacatgtgattaagctcactgcccaagaggaggttgcacttgagcttcgtgctagtcag
ggggtacccactgaactaagtgttggattcagtgtggattttgtttggaaaagtactagc
tttgatagaatgcaaggagccatgaaaactttcgccgtggatgagacaagtgtcagtgga
tacatataccatcaccttttgggacatgaagttgaacatcaaataatccgtaataccttg
ccaagacgctttggtgcaccaggacttccagaactaaatgcttcccaggttttagcagtt
aaaagtgtcctccagaagccagttagtttgattcaaggtccacctggcactggaaaaact
gtcacatctgctgcaattgtatatcacatggcaaaacaaggtcaaggacaggttcttgta
tgcgcaccaagtaacgttgctgttgatcaactggcggagaagataagctcaacaggtctc
aaggttgttaggctgtgtgcaaaatctcgagaagctgtttcatctcctgttgagcatctt
acacttcattatcaggttaggcaccttgatacatctgaaaagagcgaattgcacaagcta
caacaactgaaagatgagcaaggtgaattgtccagtagtgatgagaagaagtacaagtca
ctaaaacgtgccactgaaagagagatactgcaaagtgctgatgtcatttgttgcacctgt
gttggtgctggagatccccgcctttcaaacttccgtttccgacaagttcttattgatgag
tccacacaggcaacagagcctgaatgtcttattcctttggtgctcggtgtcaagcaggcc
gttcttgttggagatcattgccaattgggtccagtcattatgtgcaaaaaagcagctcgt
gcagggttagcacaatctctgtttgaacgccttgttatcctgggagtgaagccattcagg
ctacaggtccagtatagaatgcacccttgcctctcagaatttccgtccaactgcttctat
gaaggcacactgcaaaatggagtaactgttaatgagaggcaatcatctggaattgatttt
ccttggcctgttccaaaccggcctatgttcttctatgtgcagatgggacaagaagagatc
agtgctagtgggacatcatatttgaatagaactgaagctgcaaatgtcgaaaaaattgta
acaacatttttaagaagtggtgttgtaccaagccagattggagttatcacaccttatgaa
ggacaaagggcatatattgtaaattacatgtcaaggaatggctctcttcgccaacaactt
tacaaggaaattgaggtagcaagtgtagactcctttcagggacgagagaaagactacatt
attctgtcgtgcgttagaagcaatgagcaccagggaattgggtttctcaatgatccacgc
aggttaaatgttgcgctaactcgtgcacggtatggcatagttattcttggtaacccaaaa
gtattgagcaagcagcccctttggaatagcttgttgacacattacaaggagcatgagtgt
ctggtagaaggacctttaaacaacttaaagcagagtatggtgcaatttcagaagccaaaa
aagatctataatgaccggagattgttcctgggtggtggtcaaggtgttacgcatggagcc
aactttggggctggggccagcccagcagcagataaaagaagtggtagggggaaaggacaa
tcatttgttccttatggtccgccaaatggagttcataaacctggtgtgcacccagcaggc
tatgctgtacctcgaatgccttttcctccatttcctggggctccacattctcaaccatat
gcaattccaacccgtggaatgcatgggcccattggagctgttccaccagtgcctcaacct
ggaagtagaaattttggggcacctcgttccaatacgggtggtcctattggtggccacctt
gctcatcaacagaattctcaacaggctatgggtggcatggggtcaaactttaactaccct
ggtttggagaatcctagtagtcagccttctggtggagtccagatgtcccaaactggattg
atgacacagatgcctgtccaaggactcagtcaaacattccgtgatggtttttccattggt
gggatgtctcaggacttcttcggagatgatttcaagagtcaaggatctcatgtgccttac
aacatcgcagatttctctacacaggcttctcaaggtggttatggtgttgagtttacacaa
gcaccccaatctggatactctgggaattatatgaaccaaaatgcacatccaggatactcc
cacattggtacaaccaatgacattgtatctcaggatcacatggctcatggttctcatgga
atgtttacacaaacgggatacaatgatccctcgcaagatgagtcatctcagatgcattat
ggaatggcatctgctggccttctccagtcacagaacatgatgaaccccctatactctcaa
tcctatgcacactataacacccaacctccacagtga
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